show tabs for boilerplate

oesteban · oesteban · commit c5f599e0a1fd · 2018-07-29T23:27:31.000-07:00
diff --git a/fmriprep/viz/report.tpl b/fmriprep/viz/report.tpl
@@ -120,10 +120,21 @@ div.boiler-text {
 
 <div id="boilerplate">
     <h1 class="sub-report-title">Methods</h1>
+    {% if boilerplate %}
     <p>We kindly ask to report results preprocessed with fMRIPrep using the following
        boilerplate</p>
-    {% if boilerplate %}
-        {{ boilerplate }}
+    <ul class="nav nav-tabs" id="myTab" role="tablist">
+        {% for b in boilerplate %}
+        <li class="nav-item">
+            <a class="nav-link {% if b[0] == 0 %}active{% endif %}" id="{{ b[1] }}-tab" data-toggle="tab" href="#{{ b[1] }}" role="tab" aria-controls="{{ b[1] }}" aria-selected="true">{{ b[1] }}</a>
+        </li>
+        {% endfor %}
+    </ul>
+    <div class="tab-content" id="myTabContent">
+      {% for b in boilerplate %}
+      <div class="tab-pane fade {% if b[0] == 0 %}show active{% endif %}" id="{{ b[1] }}" role="tabpanel" aria-labelledby="{{ b[1] }}-tab">{{ b[2] }}</div>
+      {% endfor %}
+    </div>
     {% else %}
     <p class="text-danger">Failed to generate the boilerplate</p>
     {% endif %}
diff --git a/fmriprep/viz/reports.py b/fmriprep/viz/reports.py
@@ -164,17 +164,32 @@ def _read_txt(path):
         return data
 
     def generate_report(self):
-        boilerplate = None
         logs_path = self.out_dir / 'fmriprep' / 'logs'
+
+        boilerplate = []
+        boiler_idx = 0
+
         if (logs_path / 'CITATION.html').exists():
-            boilerplate = (logs_path / 'CITATION.html').read_text()
-            boilerplate = re.compile(
+            text = (logs_path / 'CITATION.html').read_text()
+            text = re.compile(
                 '<body>(.*?)</body>',
-                re.DOTALL | re.IGNORECASE).findall(boilerplate)[0].strip()
-            boilerplate = '<div class="boiler-text">%s</div>' % boilerplate
-
-        elif (logs_path / 'CITATION.md').exists():
-            boilerplate = '<pre>%s</pre>' % (logs_path / 'CITATION.md').read_text()
+                re.DOTALL | re.IGNORECASE).findall(text)[0].strip()
+            text = '<div class="boiler-text">%s</div>' % text
+            boilerplate.append((boiler_idx, 'HTML', text))
+            boiler_idx += 1
+
+        if (logs_path / 'CITATION.md').exists():
+            text = '<pre>%s</pre>' % (logs_path / 'CITATION.md').read_text()
+            boilerplate.append((boiler_idx, 'Markdown', text))
+            boiler_idx += 1
+
+        if (logs_path / 'CITATION.tex').exists():
+            text = '<pre>%s</pre>\n' % (logs_path / 'CITATION.tex').read_text()
+            text += '<h3>Bibliography</h3>\n'
+            text += '<pre>%s</pre>' % Path(
+                pkgrf('fmriprep', 'data/boilerplate.bib')).read_text()
+            boilerplate.append((boiler_idx, 'LaTeX', text))
+            boiler_idx += 1
 
         searchpath = pkgrf('fmriprep', '/')
         env = jinja2.Environment(
