add debugging config and basic settings

Author: jdkent

.vscode/launch.json

@@ -0,0 +1,101 @@
+{
+    // Use IntelliSense to learn about possible attributes.
+    // Hover to view descriptions of existing attributes.
+    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+
+        {
+            "name": "ds005-anat",
+            "type": "python",
+            "request": "launch",
+            "program": "/usr/local/miniconda/bin/fmriprep",
+            "args": [
+                "-w", "/tmp/ds005/work",
+                "/tmp/data/ds005",
+                "/tmp/ds005/derivatives",
+                "participant",
+                "--skull-strip-template", "OASIS30ANTs:res-1",
+                "--output-spaces", "MNI152NLin2009cAsym", "MNI152NLin6Asym",
+                "--sloppy", "--write-graph",
+                "--anat-only", "-vv", "--notrack"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        },
+        {
+            "name": "ds005-full",
+            "type": "python",
+            "request": "launch",
+            "program": "/usr/local/miniconda/bin/fmriprep",
+            "args": [
+                "-w", "/tmp/ds005/work",
+                "/tmp/data/ds005",
+                "/tmp/ds005/derivatives",
+                "participant",
+                "--sloppy", "--write-graph",
+                "--use-aroma",
+                "--skull-strip-template", "OASIS30ANTs:res-1",
+                "--output-space", "T1w", "template", "fsaverage5", "fsnative",
+                "--template-resampling-grid",  "native",
+                "--use-plugin", "/src/fmriprep/.circleci/legacy.yml",
+                "--cifti-output", "-vv", "--notrack"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        },
+        {
+            "name": "ds054",
+            "type": "python",
+            "request": "launch",
+            "program": "/usr/local/miniconda/bin/fmriprep",
+            "args": [
+                "-w", "/tmp/ds054/work",
+                "/tmp/data/ds054",
+                "/tmp/ds054/derivatives",
+                "participant",
+                "--fs-no-reconall", "--sloppy",
+                "--output-spaces", "MNI152NLin2009cAsym:res-2", "anat", "func",
+                "-vv",
+                "--notrack"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        },
+        {
+            "name": "ds210-anat",
+            "type": "python",
+            "request": "launch",
+            "program": "/usr/local/miniconda/bin/fmriprep",
+            "args": [
+                "-w", "/tmp/ds210/work",
+                "/tmp/data/ds210",
+                "/tmp/ds210/derivatives",
+                "participant",
+                "--fs-no-reconall", "--sloppy", "--write-graph",
+                "--anat-only", "-vv", "--notrack"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        },
+        {
+            "name": "ds210-full",
+            "type": "python",
+            "request": "launch",
+            "program": "/usr/local/miniconda/bin/fmriprep",
+            "args": [
+                "-w", "/tmp/ds210/work",
+                "/tmp/data/ds210",
+                "/tmp/ds210/derivatives",
+                "participant",
+                "--t2s-coreg", "--use-syn-sdc",
+                "--template-resampling-grid", "native",
+                "--dummy-scans", "1",
+                "--fs-no-reconall", "--sloppy", "--write-graph",
+                "--anat-only", "-vv", "--notrack"
+            ],
+            "console": "integratedTerminal",
+            "justMyCode": false
+        }
+    ]
+}

.vscode/settings.json

@@ -0,0 +1,11 @@
+{
+    "python.linting.flake8Enabled": true,
+    "python.pythonPath": "/usr/local/miniconda/bin/python",
+    "restructuredtext.confPath": "${workspaceFolder}/docs",
+    "python.testing.pytestEnabled": true,
+    "python.testing.unittestEnabled": false,
+    "python.testing.nosetestsEnabled": false,
+    "python.linting.enabled": true,
+    "python.testing.pytestArgs": [],
+    "python.linting.pylintEnabled": false
+}