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do not run as user anymore (problematic with new datalad images)
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.circleci/config.yml

Lines changed: 3 additions & 4 deletions
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@@ -21,7 +21,6 @@ jobs:
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- docker-v3-
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paths:
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- /tmp/cache/docker.tar.gz
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- /tmp/cache/ubuntu.tar.gz
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- checkout
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- setup_remote_docker
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- run:
@@ -390,7 +389,7 @@ jobs:
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sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/work && \
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sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/work
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fmriprep-docker -i poldracklab/fmriprep:latest \
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-e FMRIPREP_DEV 1 -u $(id -u) \
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives participant \
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--sloppy --write-graph --mem_mb 4096 \
@@ -410,7 +409,7 @@ jobs:
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sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/work && \
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sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/work
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fmriprep-docker -i poldracklab/fmriprep:latest \
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-e FMRIPREP_DEV 1 -u $(id -u) \
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives participant \
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--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
@@ -438,7 +437,7 @@ jobs:
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command: |
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rm /tmp/data/ds005/sub-01/func/*_run-02_*
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fmriprep-docker -i poldracklab/fmriprep:latest \
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-e FMRIPREP_DEV 1 -u $(id -u) \
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-e FMRIPREP_DEV 1 \
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--config $PWD/nipype.cfg -w /tmp/ds005/work \
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/tmp/data/ds005 /tmp/ds005/derivatives_partial participant \
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--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \

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