21
21
- docker-v3-
22
22
paths :
23
23
- /tmp/cache/docker.tar.gz
24
- - /tmp/cache/ubuntu.tar.gz
25
24
- checkout
26
25
- setup_remote_docker
27
26
- run :
@@ -390,7 +389,7 @@ jobs:
390
389
sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/work && \
391
390
sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/work
392
391
fmriprep-docker -i poldracklab/fmriprep:latest \
393
- -e FMRIPREP_DEV 1 -u $(id -u) \
392
+ -e FMRIPREP_DEV 1 \
394
393
--config $PWD/nipype.cfg -w /tmp/ds005/work \
395
394
/tmp/data/ds005 /tmp/ds005/derivatives participant \
396
395
--sloppy --write-graph --mem_mb 4096 \
@@ -410,7 +409,7 @@ jobs:
410
409
sudo setfacl -d -m group:$(id -gn):rwx /tmp/ds005/work && \
411
410
sudo setfacl -m group:$(id -gn):rwx /tmp/ds005/work
412
411
fmriprep-docker -i poldracklab/fmriprep:latest \
413
- -e FMRIPREP_DEV 1 -u $(id -u) \
412
+ -e FMRIPREP_DEV 1 \
414
413
--config $PWD/nipype.cfg -w /tmp/ds005/work \
415
414
/tmp/data/ds005 /tmp/ds005/derivatives participant \
416
415
--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
@@ -438,7 +437,7 @@ jobs:
438
437
command : |
439
438
rm /tmp/data/ds005/sub-01/func/*_run-02_*
440
439
fmriprep-docker -i poldracklab/fmriprep:latest \
441
- -e FMRIPREP_DEV 1 -u $(id -u) \
440
+ -e FMRIPREP_DEV 1 \
442
441
--config $PWD/nipype.cfg -w /tmp/ds005/work \
443
442
/tmp/data/ds005 /tmp/ds005/derivatives_partial participant \
444
443
--sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
0 commit comments