fix formatting and tests

bpinsard · bpinsard · commit d6228790560c · 2019-09-30T13:53:33.000-04:00
diff --git a/docs/workflows.rst b/docs/workflows.rst
@@ -58,6 +58,7 @@ is presented below:
         use_aroma=False,
         use_bbr=True,
         use_syn=True,
+        bids_filters=None,
     )
 
 T1w/T2w preprocessing
diff --git a/fmriprep/workflows/base.py b/fmriprep/workflows/base.py
@@ -471,7 +471,8 @@ def init_single_subject_wf(
             'bold': ['/completely/made/up/path/sub-01_task-nback_bold.nii.gz']
         }
     else:
-        subject_data = collect_data(layout, subject_id, task_id, echo_idx, bids_filters=bids_filters)[0]
+        subject_data = collect_data(layout, subject_id, task_id, echo_idx,
+            bids_filters=bids_filters)[0]
 
     # Make sure we always go through these two checks
     if not anat_only and subject_data['bold'] == []:

Original file line number	Diff line number	Diff line change
`@@ -471,7 +471,8 @@ def init_single_subject_wf(`
`471`	`471`	`'bold': ['/completely/made/up/path/sub-01_task-nback_bold.nii.gz']`
`472`	`472`	`}`
`473`	`473`	`else:`
`474`		`- subject_data = collect_data(layout, subject_id, task_id, echo_idx, bids_filters=bids_filters)[0]`
	`474`	`+ subject_data = collect_data(layout, subject_id, task_id, echo_idx,`
	`475`	`+ bids_filters=bids_filters)[0]`
`475`	`476`
`476`	`477`	`# Make sure we always go through these two checks`
`477`	`478`	`if not anat_only and subject_data['bold'] == []:`