@@ -62,6 +62,28 @@ This layout, now the default, may be explicitly specified with the
62
62
For compatibility with versions of fMRIPrep prior to 21.0, the
63
63
`legacy layout `_ is available via ``--output-layout legacy ``.
64
64
65
+ Processing level
66
+ ----------------
67
+ As of version 23.2.0, fMRIPrep supports three levels of derivatives:
68
+
69
+ * ``--level minimal ``: This processing mode aims to produce the smallest
70
+ working directory and output dataset possible, while enabling all further
71
+ processing results to be deterministically generated. Most components of
72
+ the `visual reports `_ can be generated at this level, so the quality of
73
+ preprocessing can be assessed. Because no resampling is done, confounds
74
+ and carpetplots will be missing from the reports.
75
+ * ``--level resampling ``: This processing mode aims to produce additional
76
+ derivatives that enable third-party resampling, resampling BOLD series
77
+ in the working directory as needed, but these are not saved to the output
78
+ directory.
79
+ The ``--me-output-echos `` flag will be enabled at this level, in which
80
+ case the individual echos will be saved to the working directory after
81
+ slice-timing correction, head-motion correction, and susceptibility
82
+ distortion correction.
83
+ * ``--level full ``: This processing mode aims to produce all derivatives
84
+ that have previously been a part of the fMRIPrep output dataset.
85
+ This is the default processing level.
86
+
65
87
Visual Reports
66
88
--------------
67
89
*fMRIPrep * outputs summary reports, written to ``<output dir>/fmriprep/sub-<subject_label>.html ``.
0 commit comments