Update .circleci/config.yml

trying to reuse the workdir, IIRC it gave me errors before

Co-authored-by: Chris Markiewicz <[email protected]>

Author: bpinsard

.circleci/config.yml

@@ -555,20 +555,17 @@ jobs:
           name: Re-run fMRIPrep on single run of task data, without T1w in BIDS
           no_output_timeout: 2h
           command: |
-            mkdir -p /tmp/${DATASET}/work_partial_noT1w
-            chmod a+rwX /tmp/${DATASET}/work_partial_noT1w
             rm -Rf /tmp/data/${DATASET}/sub-01/anat
             FASTRACK_ARG="--derivatives anat=/tmp/${DATASET}/smriprep"
             fmriprep-docker -i nipreps/fmriprep:latest \
                 -e FMRIPREP_DEV 1 --user $(id -u):$(id -g) \
                 --network none \
-                --config $PWD/nipype.cfg -w /tmp/${DATASET}/work_partial_noT1w \
+                --config $PWD/nipype.cfg -w /tmp/${DATASET}/work_partial \
                 /tmp/data/${DATASET} /tmp/${DATASET}/fmriprep-partial-noT1w participant \
                 --fs-subjects-dir /tmp/${DATASET}/freesurfer \
                 ${FASTRACK_ARG} \
                 --sloppy --write-graph --mem-mb 14336 \
-                --output-spaces MNI152NLin2009cAsym fsaverage5 \
-                --nthreads 4 --cifti-output --project-goodvoxels -vv
+                --level minimal --nthreads 4 -vv
       - run:
           name: Clean working directory
           when: on_success