pin: nipreps/sdcflows#506

Author: effigies

fmriprep/workflows/base.py

@@ -726,23 +726,11 @@ def init_single_subject_wf(
             if node.split('.')[-1].startswith('ds_'):
                 fmap_wf.get_node(node).interface.out_path_base = ''
 
-        # Retrieve fieldmap files from the derivatives directory
-        # TODO: SDCFlows should route these files through the outputnode
-        output_map = {
-            'fmap': 'fmap_derivatives_wf.ds_fieldmap.out_file',
-            'fmap_ref': 'fmap_derivatives_wf.ds_reference.out_file',
-            'fmap_coeff': 'fmap_derivatives_wf.ds_coeff.out_file',
-            'fmap_mask': 'outputnode.fmap_mask',
-            'fmap_id': 'outputnode.fmap_id',
-            'sdc_method': 'outputnode.method',
-        }
-
         workflow.connect([
             (fmap_wf, fmap_buffers[field], [
                 # We get "sdc_method" as "method" from estimator workflows
                 # All else stays the same, and no other sdc_ prefixes are used
-                (output_map[field], 'in2')
-                # (f'outputnode.{field.removeprefix("sdc_")}', 'in2'),
+                (f'outputnode.{field.removeprefix("sdc_")}', 'in2'),
             ])
             for field in fmap_buffers
         ])  # fmt:skip

pyproject.toml

@@ -34,7 +34,7 @@ dependencies = [
     "psutil >= 5.4",
     "pybids >= 0.16",
     "requests >= 2.27",
-    "sdcflows >= 2.13.1",
+    "sdcflows @ git+https://github.com/nipreps/sdcflows.git@refs/pull/506/head",
     "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
     "tedana >= 25.0.0",
     "templateflow >= 24.2.2",