sty: ruff

Author: mgxd

fmriprep/cli/workflow.py

@@ -30,11 +30,13 @@
 a hard-limited memory-scope.
 
 """
+
 import typing as ty
 
 if ty.TYPE_CHECKING:
     from bids.layout import BIDSLayout
 
+
 def build_workflow(config_file, retval):
     """Create the Nipype Workflow that supports the whole execution graph."""
 
@@ -95,9 +97,7 @@ def build_workflow(config_file, retval):
     # Called with reports only
     if config.execution.reports_only:
         build_log.log(
-            25,
-            'Running --reports-only on %s',
-            fmt_subjects_sessions(subject_session_list)
+            25, 'Running --reports-only on %s', fmt_subjects_sessions(subject_session_list)
         )
         if not session_list:
             session_list = (
@@ -258,6 +258,7 @@ def create_processing_groups(
 ) -> list[tuple[str]]:
     """Generate a list of subject-session pairs to be processed."""
     from bids.layout import Query
+
     subject_session_list = []
 
     for subject in subject_list:

fmriprep/config.py

@@ -792,7 +792,7 @@ def get(flat=False):
         'seeds': seeds.get(),
     }
 
-    if (pg := settings['execution'].get('processing_groups')):
+    if pg := settings['execution'].get('processing_groups'):
         settings['execution']['processing_groups'] = _serialize_pg(pg)
 
     if not flat:
@@ -847,6 +847,7 @@ def init_spaces(checkpoint=True):
     # Make the SpatialReferences object available
     workflow.spaces = spaces
 
+
 def _serialize_pg(value: list[tuple[str, list[str] | None]]) -> list[str]:
     """
     Serialize a list of participant-session tuples to be TOML-compatible.

fmriprep/utils/misc.py

@@ -90,4 +90,4 @@ def fmt_subjects_sessions(subses: list[tuple[str]], concat_limit: int = 1):
         else:
             output.append(f'sub-{subject} ses-{session}')
 
-    return ', '.join(output)
+    return ', '.join(output)

fmriprep/workflows/base.py

@@ -105,9 +105,12 @@ def init_fmriprep_wf():
         log_dir = log_dir / 'log' / config.execution.run_uuid
 
         wf_name = '_'.join(
-            ('sub', subject_id,) +
-            (('ses', ses_str) if ses_str else ()) +
-            ('wf',)
+            (
+                'sub',
+                subject_id,
+            )
+            + (('ses', ses_str) if ses_str else ())
+            + ('wf',)
         )
         single_subject_wf = init_single_subject_wf(subject_id, sessions, name=wf_name)