fix: Adapt to transposed ndindex in nitransforms

Author: effigies

fmriprep/interfaces/resampling.py

@@ -569,7 +569,7 @@ def resample_image(
         hmc = []
 
     # Retrieve the RAS coordinates of the target space
-    coordinates = nt.base.SpatialReference.factory(target).ndcoords.astype('f4').T
+    coordinates = nt.base.SpatialReference.factory(target).ndcoords.astype('f4')
 
     # We will operate in voxel space, so get the source affine
     vox2ras = source.affine

pyproject.toml

@@ -26,7 +26,7 @@ dependencies = [
     "nipype >= 1.8.5",
     "nireports >= 24.1.0",
     "nitime >= 0.9",
-    "nitransforms >= 24.1.1",
+    "nitransforms >= 25.0.1",
     "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
     "numpy >= 1.24",
     "packaging >= 24",