RF: Remove dead code

Author: effigies

fmriprep/workflows/bold/__init__.py

@@ -16,27 +16,18 @@
 
 """
 
-from .base import init_func_preproc_wf
 from .confounds import init_bold_confs_wf
 from .hmc import init_bold_hmc_wf
-from .registration import init_bold_reg_wf, init_bold_t1_trans_wf
-from .resampling import (
-    init_bold_preproc_trans_wf,
-    init_bold_std_trans_wf,
-    init_bold_surf_wf,
-)
+from .registration import init_bold_reg_wf
+from .resampling import init_bold_surf_wf
 from .stc import init_bold_stc_wf
 from .t2s import init_bold_t2s_wf
 
 __all__ = [
     'init_bold_confs_wf',
     'init_bold_hmc_wf',
-    'init_bold_std_trans_wf',
-    'init_bold_preproc_trans_wf',
     'init_bold_reg_wf',
     'init_bold_stc_wf',
     'init_bold_surf_wf',
-    'init_bold_t1_trans_wf',
     'init_bold_t2s_wf',
-    'init_func_preproc_wf',
 ]

fmriprep/workflows/bold/apply.py

@@ -1,29 +1,15 @@
 from __future__ import annotations
 
-import os
-import typing as ty
-
-import nibabel as nb
 import nipype.interfaces.utility as niu
 import nipype.pipeline.engine as pe
-from niworkflows.interfaces.header import ValidateImage
 from niworkflows.interfaces.nibabel import GenerateSamplingReference
 from niworkflows.interfaces.utility import KeySelect
-from niworkflows.utils.connections import listify
-
-from fmriprep import config
 
 from ...interfaces.resampling import (
     DistortionParameters,
     ReconstructFieldmap,
     ResampleSeries,
 )
-from ...utils.misc import estimate_bold_mem_usage
-from .stc import init_bold_stc_wf
-from .t2s import init_bold_t2s_wf, init_t2s_reporting_wf
-
-if ty.TYPE_CHECKING:
-    from niworkflows.utils.spaces import SpatialReferences
 
 
 def init_bold_volumetric_resample_wf(
@@ -130,32 +116,6 @@ def init_bold_volumetric_resample_wf(
     return workflow
 
 
-def init_bold_apply_wf(
-    *,
-    spaces: SpatialReferences,
-    name: str = 'bold_apply_wf',
-) -> pe.Workflow:
-    """TODO: Docstring"""
-    from smriprep.workflows.outputs import init_template_iterator_wf
-
-    workflow = pe.Workflow(name=name)
-
-    if spaces.is_cached() and spaces.cached.references:
-        template_iterator_wf = init_template_iterator_wf(spaces=spaces)
-        # TODO: Refactor bold_std_trans_wf
-        # bold_std_trans_wf = init_bold_std_trans_wf(
-        #     freesurfer=config.workflow.run_reconall,
-        #     mem_gb=mem_gb["resampled"],
-        #     omp_nthreads=config.nipype.omp_nthreads,
-        #     spaces=spaces,
-        #     multiecho=multiecho,
-        #     use_compression=not config.execution.low_mem,
-        #     name="bold_std_trans_wf",
-        # )
-
-    return workflow
-
-
 def _gen_inverses(inlist: list) -> list[bool]:
     """Create a list indicating the first transform should be inverted.