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fsnative2t1w_xfm hanging with --fs-no-resume in fmriprep 25.2.2 #3562

@joey-scanga

Description

@joey-scanga

What happened?

Saw this in a closed issue (#3541 ), but I'm also experiencing hanging when running fmriprep 25.2.2 with the --fs-no-resume flag.

What command did you use?

docker run --rm -it -u 2582:10 \
    -v /usr/local/pkg/freesurfer7.3/.license:/opt/freesurfer/license.txt:ro \
    -v /data/sylvester/data1/datasets/spc_new/rawdata:/data:ro \
    -v /data/sylvester/data1/datasets/spc_new/derivatives/fmriprep:/out \
    -v /data/sylvester/scratch1/spc_new/fmriprep/sub-SPC026_ses-01:/work \
    -v /data/sylvester/data1/datasets/spc_new/derivatives/fmriprep/sourcedata/freesurfer:/deriv1 \
    nipreps/fmriprep:25.2.2 \
    /data /out participant \
    --participant-label SPC026 \
    -w /work \
    --verbose \
    --fs-subjects-dir /deriv1 \
    --fd-spike-threshold 0.9 \
    --fs-no-resume \
    --cifti-output 91k \
    --output-spaces MNI152NLin2009cAsym

What version of fMRIPrep are you running?

25.2.2

How are you running fMRIPrep?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

FreeSurfer

Please copy and paste any relevant log output.

Additional information / screenshots

No response

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