-
Notifications
You must be signed in to change notification settings - Fork 307
Open
Labels
Description
What happened?
Saw this in a closed issue (#3541 ), but I'm also experiencing hanging when running fmriprep 25.2.2 with the --fs-no-resume flag.
What command did you use?
docker run --rm -it -u 2582:10 \
-v /usr/local/pkg/freesurfer7.3/.license:/opt/freesurfer/license.txt:ro \
-v /data/sylvester/data1/datasets/spc_new/rawdata:/data:ro \
-v /data/sylvester/data1/datasets/spc_new/derivatives/fmriprep:/out \
-v /data/sylvester/scratch1/spc_new/fmriprep/sub-SPC026_ses-01:/work \
-v /data/sylvester/data1/datasets/spc_new/derivatives/fmriprep/sourcedata/freesurfer:/deriv1 \
nipreps/fmriprep:25.2.2 \
/data /out participant \
--participant-label SPC026 \
-w /work \
--verbose \
--fs-subjects-dir /deriv1 \
--fd-spike-threshold 0.9 \
--fs-no-resume \
--cifti-output 91k \
--output-spaces MNI152NLin2009cAsymWhat version of fMRIPrep are you running?
25.2.2
How are you running fMRIPrep?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
FreeSurfer
Please copy and paste any relevant log output.
Additional information / screenshots
No response