STYLE: Fix style warnings raised by latest ruff release

Fix style warnings raised by latest `ruff` release (v0.9.0, released Jan
9, 2025).

Fixes style warnings raised for example in:
https://github.com/nipreps/mriqc/actions/runs/12700111857/job/35402136045?pr=1369#step:4:134

`ruff` v0.9.0 release blog post:
https://astral.sh/blog/ruff-v0.9.0

Author: jhlegarreta

mriqc/bin/labeler.py

@@ -54,7 +54,7 @@ def main():
                 finished[j - 1] = finished[j - 1] + 1
                 hold[j - 1, i - 1] = int(file[i][j])
     finished = np.divide(np.round(np.divide(finished, total) * 1000), 10)
-    print(f"Completed: {' '.join(['%g%%' % f for f in finished])}")
+    print(f'Completed: {" ".join(["%g%%" % f for f in finished])}')
     print(f'Total: {np.round(np.divide(np.sum(finished), 3))}%')
     input('Waiting: [enter]')
 

mriqc/cli/parser.py

@@ -603,8 +603,8 @@ def parse_args(args=None, namespace=None):
         selected_label = set(config.execution.participant_label)
         if missing_subjects := selected_label - set(participant_label):
             parser.error(
-                "One or more participant labels were not found in the BIDS directory: "
-                f"{', '.join(missing_subjects)}."
+                'One or more participant labels were not found in the BIDS directory: '
+                f'{", ".join(missing_subjects)}.'
             )
         participant_label = selected_label
 

mriqc/instrumentation/resources.py

@@ -175,8 +175,8 @@ def run(self, *args, **kwargs):
 
         # Write headers (comment trace + header row)
         _header = [
-            f"# MRIQC Resource recorder started tracking PID {self._pid} "
-            f"{datetime.now(tz=UTC).strftime('(%Y/%m/%d; %H:%M:%S)')}",
+            f'# MRIQC Resource recorder started tracking PID {self._pid} '
+            f'{datetime.now(tz=UTC).strftime("(%Y/%m/%d; %H:%M:%S)")}',
             '\t'.join(('timestamp', *SAMPLE_ATTRS)).replace(
                 'memory_info', 'mem_rss_mb\tmem_vsm_mb'
             ),
@@ -198,8 +198,8 @@ def run(self, *args, **kwargs):
                 sample2file(self._pid, fd=_logfile, timestamp=wait_til)
             except psutil.NoSuchProcess:
                 print(
-                    f"# MRIQC Resource recorder killed "
-                    f"{datetime.now(tz=UTC).strftime('(%Y/%m/%d; %H:%M:%S)')}",
+                    f'# MRIQC Resource recorder finished '
+                    f'{datetime.now(tz=UTC).strftime("(%Y/%m/%d; %H:%M:%S)")}',
                     file=_logfile,
                 )
                 _logfile.flush()
@@ -216,6 +216,6 @@ def stop(self, *args):
         self._done.set()
         with Path(self._logfile).open('a') as f:
             f.write(
-                f"# MRIQC Resource recorder finished "
-                f"{datetime.now(tz=UTC).strftime('(%Y/%m/%d; %H:%M:%S)')}",
+                f'# MRIQC Resource recorder finished '
+                f'{datetime.now(tz=UTC).strftime("(%Y/%m/%d; %H:%M:%S)")}',
             )

mriqc/instrumentation/viz.py

@@ -45,7 +45,7 @@ def plot(filename, param='mem_vsm_mb', mask_processes=(), out_file=None):
     for pid in pids:
         pid_info = data[data['pid'] == pid]
         try:
-            label = f"{pid_info['name'].values[0]}"
+            label = f'{pid_info["name"].values[0]}'
         except KeyError:
             label = f'{pid}'
 

mriqc/interfaces/anatomical.py

@@ -124,8 +124,7 @@ def _run_interface(self, runtime):  # pylint: disable=R0914,E1101
 
         if np.sum(segdata > 0) < 1e3:
             raise RuntimeError(
-                'Input segmentation data is likely corrupt. '
-                'MRIQC failed to process this dataset.'
+                'Input segmentation data is likely corrupt. MRIQC failed to process this dataset.'
             )
 
         # Load air, artifacts and head masks

mriqc/utils/bids.py

@@ -68,7 +68,7 @@ def write_derivative_description(bids_dir, deriv_dir):
     if 'MRIQC_DOCKER_TAG' in os.environ:
         desc['GeneratedBy'][0]['Container'] = {
             'Type': 'docker',
-            'Tag': f"nipreps/mriqc:{os.environ['MRIQC_DOCKER_TAG']}",
+            'Tag': f'nipreps/mriqc:{os.environ["MRIQC_DOCKER_TAG"]}',
         }
     if 'MRIQC_SINGULARITY_URL' in os.environ:
         desc['GeneratedBy'][0]['Container'] = {
@@ -83,7 +83,7 @@ def write_derivative_description(bids_dir, deriv_dir):
         orig_desc = json.loads(fname.read_text())
 
     if 'Name' in orig_desc:
-        desc['Name'] = f"MRIQC - {orig_desc['Name']}"
+        desc['Name'] = f'MRIQC - {orig_desc["Name"]}'
     else:
         desc['Name'] = 'MRIQC - MRI Quality Control'
 
@@ -191,6 +191,6 @@ def derive_bids_fname(
         else:
             bidts.insert(position, entity.strip('_'))
 
-    retval = newpath / f"{'_'.join(bidts)}_{newsuffix}.{newext.strip('.')}"
+    retval = newpath / f'{"_".join(bidts)}_{newsuffix}.{newext.strip(".")}'
 
     return retval.absolute() if absolute else retval

mriqc/utils/misc.py

@@ -501,7 +501,7 @@ def initialize_meta_and_data(
 
         config.loggers.cli.log(
             25,
-            f"File size ('{mod}'): {_max_size:.2f}|{np.mean(size):.2f} " 'GB [maximum|average].',
+            f"File size ('{mod}'): {_max_size:.2f}|{np.mean(size):.2f} GB [maximum|average].",
         )