@@ -19,7 +19,7 @@ tip and troubleshooting guidelines for both
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`Singularity or Apptainer <https://www.nipreps.org/apps/singularity/ >`__.
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In addition to container-specific guidelines, the documentation
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also includes specific
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- `help for processing DataLad-managed datasets <https://www.nipreps.org/apps/datalad/ >`__
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+ `help for processing DataLad-managed datasets <https://www.nipreps.org/apps/datalad/ >`__.
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The rest of this documentation page applies to both *bare-metal *
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and containerized execution modes.
@@ -86,6 +86,22 @@ in :ref:`The MRIQC Reports <reports>`.
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In the ``group `` level, the :abbr: `IQMs ( image quality metrics ) ` extracted in
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first place are combined in a table and the group reports are generated.
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+ *MRIQC * can fetch data in *DataLad * datasets
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+ --------------------------------------------
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+ As of *MRIQC * 22.0.3, the application bundles *DataLad *, enabling automatic
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+ data fetching in *DataLad * datasets.
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+ Employing this feature in containerized environments may lead to
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+ somewhat obscure errors (see, for example,
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+ `nipreps/mriqc#1307 <https://github.com/nipreps/mriqc/issues/1307 >`__).
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+ If you intend to use *DataLad * datasets, please read carefully
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+ *NiPreps *' `help for processing DataLad-managed datasets <https://www.nipreps.org/apps/datalad/ >`__.
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+
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+ Alternatively, this feature can be disabled by adding
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+ ``--no-datalad-get `` to the command line.
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+ This will separate *DataLad * management from *MRIQC *'s operation,
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+ which can be an effective way of debugging issues and averting
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+ fault conditions.
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+
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Command line interface
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----------------------
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.. argparse ::
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