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CI: Add cifti smoke test
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.circleci/config.yml

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@@ -16,7 +16,6 @@ _python_defaults: &python_defaults
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password: $DOCKER_PAT
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working_directory: /tmp/src/nibabies
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_docker_auth: &docker_auth
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name: Docker authentication
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command: |
@@ -160,7 +159,6 @@ jobs:
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- /tmp/docker
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- /tmp/images
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get_data:
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!!merge <<: *python_defaults
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working_directory: /home/circleci/data
@@ -279,7 +277,6 @@ jobs:
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- store_artifacts:
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path: /tmp/data/reports
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test_bcp:
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!!merge <<: *machine_defaults
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environment:
@@ -412,7 +409,7 @@ jobs:
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--nthreads 4 -vv --age-months 2 --sloppy \
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--surface-recon-method infantfs \
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--derivatives precomputed=/tmp/data/${DATASET}-t2only/derivatives/bibsnet \
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--output-layout bids --anat-only
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--output-layout bids --anat-only --cifti-output
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- run:
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name: Checking outputs of T2-only nibabies anat
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command: |
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- store_artifacts:
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path: /tmp/bcp/derivatives
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deploy_docker_patches:
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!!merge <<: *machine_defaults
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working_directory: *src
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docker tag nipreps/nibabies:dev nipreps/nibabies:${CIRCLE_BRANCH#docker/}
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docker push nipreps/nibabies:${CIRCLE_BRANCH#docker/}
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deploy_docker:
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!!merge <<: *machine_defaults
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steps:
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fi
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fi
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test_deploy_pypi:
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!!merge <<: *python_defaults
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steps:
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- store_artifacts:
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path: /tmp/src/nibabies/wrapper/dist
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deploy_pypi:
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!!merge <<: *python_defaults
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steps:
@@ -584,14 +577,12 @@ jobs:
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# upload wrapper
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python -m twine upload wrapper/dist/nibabies*
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deployable:
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docker:
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- image: busybox:latest
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steps:
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- run: echo Deploying!
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workflows:
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version: 2
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build_test_deploy:

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