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DOC: Add long description including background/significance [skip ci] (#243)
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long_description.md

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Magnetic resonance imaging (MRI) requires a set of preprocessing steps before
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any statistical analysis. In an effort to standardize preprocessing,
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we developed [fMRIPrep](https://fmriprep.org/en/stable/) (a preprocessing tool
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for functional MRI, fMRI), and generalized its standardization approach to
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other neuroimaging modalities ([NiPreps](https://www.nipreps.org/)). NiPreps
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brings standardization and ease of use to the researcher, and effectively
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limits the methodological variability within preprocessing. fMRIPrep is designed
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to be used across wide ranges of populations; however it is designed for (and
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evaluated with) human adult datasets. Infant MRI (i.e., 0-2 years) presents
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unique challenges due to head size (e.g., reduced SNR and increased partial
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voluming and rapid shifting in tissue contrast due to myelination. These and
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other challenges require a more specialized workflow. *NiBabies*, an open-source
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pipeline extending from fMRIPrep for infant structural and functional MRI
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preprocessing, aims to address this need.
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The workflow is built atop [Nipype](https://nipype.readthedocs.io) and encompases a large
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set of tools from well-known neuroimaging packages, including
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[FSL](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/),
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[ANTs](https://stnava.github.io/ANTs/),
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[FreeSurfer](https://surfer.nmr.mgh.harvard.edu/),
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[AFNI](https://afni.nimh.nih.gov/),
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[Connectome Workbench](https://humanconnectome.org/software/connectome-workbench),
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and [Nilearn](https://nilearn.github.io/).
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This pipeline was designed to provide the best software implementation for each state of
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preprocessing, and will be updated as newer and better neuroimaging software becomes
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available.
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*NiBabies* performs basic preprocessing steps (coregistration, normalization, unwarping,
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segmentation, skullstripping etc.) providing outputs that can be
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easily submitted to a variety of group level analyses, including task-based or resting-state
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fMRI, graph theory measures, surface or volume-based statistics, etc.
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*NiBabies* allows you to easily do the following:
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* Take fMRI data from *unprocessed* (only reconstructed) to ready for analysis.
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* Implement tools from different software packages.
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* Achieve optimal data processing quality by using the best tools available.
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* Generate preprocessing-assessment reports, with which the user can easily identify problems.
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* Receive verbose output concerning the stage of preprocessing for each subject, including
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meaningful errors.
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* Automate and parallelize processing steps, which provides a significant speed-up from
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typical linear, manual processing.
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[Repository](https://github.com/nipreps/nibabies)
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[Documentation](https://nibabies.readthedocs.io/en/stable/)

setup.cfg

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Programming Language :: Python :: 3.9
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description = NeuroImaging Babies provides processing tools for magnetic resonance images of the brain in infants.
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license = Apache License, 2.0
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long_description = file:README.md
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long_description = file:long_description.md
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long_description_content_type = text/markdown; charset=UTF-8
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project_urls =
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Documentation=https://nibabies.readthedocs.io/en/latest/

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