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1 parent e1d6b55 commit 15d8caeCopy full SHA for 15d8cae
nibabies/workflows/bold/boldref.py
@@ -63,9 +63,9 @@ def init_infant_epi_reference_wf(
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# fmt:off
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wf.connect([
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- (inputnode, epi_reference_wf, [('epi_file', 'in_files')]),
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- (epi_reference_wf, boldref_mask, [('epi_ref_file', 'in_file')]),
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- (epi_reference_wf, outputnode, [('epi_ref_file', 'boldref_file')]),
+ (inputnode, epi_reference_wf, [('epi_file', 'inputnode.in_files')]),
+ (epi_reference_wf, boldref_mask, [('outputnode.epi_ref_file', 'in_file')]),
+ (epi_reference_wf, outputnode, [('outputnode.epi_ref_file', 'boldref_file')]),
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(boldref_mask, outputnode, [('out_mask', 'boldref_mask')]),
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])
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# fmt:on
@@ -78,7 +78,7 @@ def init_infant_epi_reference_wf(
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(inputnode, select_frames, [('epi_file', 'in_file')]),
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- (select_frames, epi_reference_wf, [('t_mask', 't_mask')]),
+ (select_frames, epi_reference_wf, [('t_masks', 'inputnode.t_masks')]),
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return wf
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