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FIX: Replace freesurfer with recon_method
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  • nibabies/workflows/anatomical

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nibabies/workflows/anatomical/base.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -196,12 +196,12 @@ def init_infant_anat_wf(
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# Define output workflows
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anat_reports_wf = init_anat_reports_wf(
199-
surface_recon=freesurfer, output_dir=output_dir, sloppy=sloppy
199+
surface_recon=recon_method, output_dir=output_dir, sloppy=sloppy
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)
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anat_derivatives_wf = init_anat_derivatives_wf(
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bids_root=bids_root,
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surface_recon=freesurfer,
204+
surface_recon=recon_method,
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num_t1w=num_t1w,
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num_t2w=num_t2w,
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output_dir=output_dir,
@@ -427,7 +427,7 @@ def init_infant_anat_wf(
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])
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# fmt:on
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430-
if not freesurfer:
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if not recon_method:
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return wf
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if recon_method == 'freesurfer':

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