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| 1 | +23.1.0 (TBD) |
| 2 | +============ |
| 3 | +The next minor release of *NiBabies*, this release includes a number of new goodies, including: |
| 4 | + |
| 5 | +### New surface reconstruction option |
| 6 | +M-CRIB-S (Adamson et al., https://www.nature.com/articles/s41598-020-61326-2), has shown to improve performance in participants under 9 months. If you would like to try this method, add the following to your command: `--surface-recon-method mcribs`. |
| 7 | + |
| 8 | +Note: Currently, a pre-computed segmentation derivative must be provided to run mcribs. |
| 9 | + |
| 10 | +### Improved batch processing |
| 11 | +*NiBabies* now automatically parses the BIDS directory for participant ages, first searching in the |
| 12 | +participant's `session.tsv`, and falling back to `participants.tsv`. This simplifies batch submissions including multiple subjects & sessions. As a result, the `--age-months` flag has been deprecated, and will be removed in a later release. |
| 13 | + |
| 14 | +### Goodvoxels projection |
| 15 | +An option to determine and exclude high-variance voxels from being projected to the surface when creating CIFTI files. To enable this, add `--project-goodvoxels` to your command. |
| 16 | + |
| 17 | + |
| 18 | +## Full Changelog |
| 19 | + * CI: Purge codecov python package (#282) |
| 20 | + * DKR: Upgrade Docker base, c3d (#275) |
| 21 | + * DKR: Add M-CRIB-S to Docker container (#283) |
| 22 | + * DKR: Update dependencies, split into multi-stage build |
| 23 | + * ENH: Add option to exclude projecting high variance voxels to surface (#278) |
| 24 | + * ENH: Resample morphometrics to fsLR CIFTI-2 files when outputing CIFTIs (#279) |
| 25 | + * ENH: Add MCRIBReconAll as alternative surface reconstruction method (#283) |
| 26 | + * ENH: Reorder anatomical processsing, run ANTs DenoiseImage on anatomicals (#286) |
| 27 | + * ENH: Extract participant ages from BIDS sources, deprecate `--age-months` (#287) |
| 28 | + * ENH: Dilate BOLD mask by 2 voxels to prevent over-aggressive masking degrading T2star map estimation (#296) |
| 29 | + * FIX: Improve free memory estimation (#284) |
| 30 | + * FIX: Ensure age is extracted from sessions file (#291) |
| 31 | + * FIX: Restore CIFTI medial wall masking, subcortical volume LAS reorientation (#298) |
| 32 | + * FIX: Recify "goodvoxels" surface projection (#301) |
| 33 | + * MAINT: Drop TemplateFlowSelect patches (#290) |
| 34 | + |
1 | 35 | 23.0.0 (January 23, 2023)
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2 | 36 | =========================
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3 | 37 | New year, new *NiBabies* minor series!
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