chore: bump requirements

Author: mgxd

requirements.txt

@@ -1,10 +1,10 @@
 #
-# This file is autogenerated by pip-compile with Python 3.11
+# This file is autogenerated by pip-compile with Python 3.13
 # by the following command:
 #
 #    pip-compile --extra=container --output-file=requirements.txt --strip-extras pyproject.toml
 #
-acres==0.3.0
+acres==0.5.0
     # via
     #   bidsschematools
     #   nibabies (pyproject.toml)
@@ -22,17 +22,15 @@ attrs==25.3.0
     # via
     #   niworkflows
     #   sdcflows
-backports-tarfile==1.2.0
-    # via jaraco-context
 bids-validator==1.14.7.post0
     # via pybids
-bidsschematools==1.0.8
+bidsschematools==1.0.10
     # via bids-validator
 bokeh==3.6.3
     # via tedana
-boto3==1.38.18
+boto3==1.38.35
     # via datalad
-botocore==1.38.18
+botocore==1.38.35
     # via
     #   boto3
     #   s3transfer
@@ -46,7 +44,7 @@ ci-info==0.3.0
     # via
     #   etelemetry
     #   migas
-click==8.2.0
+click==8.2.1
     # via
     #   bidsschematools
     #   nipype
@@ -57,7 +55,7 @@ contourpy==1.3.2
     #   matplotlib
 cycler==0.12.1
     # via matplotlib
-datalad==1.1.6
+datalad==1.2.0
     # via
     #   datalad-next
     #   datalad-osf
@@ -76,15 +74,15 @@ fasteners==0.19
     # via datalad
 filelock==3.18.0
     # via nipype
-fonttools==4.58.0
+fonttools==4.58.2
     # via matplotlib
 formulaic==1.1.1
     # via pybids
 frozendict==2.4.6
     # via pybids
-fsspec==2025.3.2
+fsspec==2025.5.1
     # via universal-pathlib
-h5py==3.13.0
+h5py==3.14.0
     # via nitransforms
 humanize==4.12.3
     # via
@@ -94,18 +92,12 @@ idna==3.10
     # via requests
 imageio==2.37.0
     # via scikit-image
-importlib-metadata==8.7.0
-    # via keyring
-importlib-resources==6.5.2
-    # via nibabel
-indexed-gzip==1.9.4
+indexed-gzip==1.9.5
     # via smriprep
 interface-meta==1.3.0
     # via formulaic
 iso8601==2.1.0
     # via datalad
-isodate==0.6.1
-    # via rdflib
 jaraco-classes==3.4.0
     # via
     #   keyring
@@ -124,7 +116,7 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.5.0
+joblib==1.5.1
     # via
     #   nilearn
     #   robustica
@@ -151,7 +143,6 @@ lxml==5.4.0
     # via
     #   nilearn
     #   nireports
-    #   prov
     #   svgutils
 mapca==0.0.5
     # via tedana
@@ -176,7 +167,7 @@ more-itertools==10.7.0
     #   jaraco-functools
 msgpack==1.1.0
     # via datalad
-networkx==3.4.2
+networkx==3.5
     # via
     #   nipype
     #   prov
@@ -207,18 +198,18 @@ nipype==1.10.0
     #   niworkflows
     #   sdcflows
     #   smriprep
-nireports==25.0.1
+nireports==25.2.0
     # via
     #   nibabies (pyproject.toml)
     #   sdcflows
 nitime==0.11
     # via nibabies (pyproject.toml)
-nitransforms==24.1.1
+nitransforms==24.1.2
     # via
     #   nibabies (pyproject.toml)
     #   niworkflows
     #   sdcflows
-niworkflows==1.13.3
+niworkflows==1.13.4
     # via
     #   nibabies (pyproject.toml)
     #   sdcflows
@@ -297,7 +288,7 @@ platformdirs==4.3.8
     #   pooch
 pooch==1.8.2
     # via nibabies (pyproject.toml)
-prov==2.0.1
+prov==2.0.2
     # via nipype
 psutil==7.0.0
     # via nibabies (pyproject.toml)
@@ -316,7 +307,9 @@ pybtex==0.24.0
 pybtex-apa-style==1.3
     # via tedana
 pydot==4.0.0
-    # via nipype
+    # via
+    #   nipype
+    #   prov
 pyparsing==3.2.3
     # via
     #   matplotlib
@@ -329,7 +322,7 @@ python-dateutil==2.9.0.post0
     #   nipype
     #   pandas
     #   prov
-python-gitlab==5.6.0
+python-gitlab==6.0.0
     # via datalad
 pytz==2025.2
     # via pandas
@@ -341,11 +334,9 @@ pyyaml==6.0.2
     #   niworkflows
     #   pybtex
     #   smriprep
-rdflib==6.3.2
-    # via
-    #   nipype
-    #   prov
-requests==2.32.3
+rdflib==7.1.4
+    # via nipype
+requests==2.32.4
     # via
     #   datalad
     #   etelemetry
@@ -360,7 +351,7 @@ requests-toolbelt==1.0.0
     # via python-gitlab
 robustica==0.1.4
     # via tedana
-s3transfer==0.12.0
+s3transfer==0.13.0
     # via boto3
 scikit-image==0.25.2
     # via
@@ -387,19 +378,19 @@ scipy==1.15.2
     #   scikit-learn
     #   sdcflows
     #   tedana
-sdcflows==2.13.0
+sdcflows==2.13.1
     # via nibabies (pyproject.toml)
 seaborn==0.13.2
     # via
     #   nireports
     #   niworkflows
+    #   tedana
 simpleitk==2.5.0
     # via nibabies (pyproject.toml)
 simplejson==3.20.1
     # via nipype
 six==1.17.0
     # via
-    #   isodate
     #   osfclient
     #   pybtex
     #   python-dateutil
@@ -409,7 +400,7 @@ sqlalchemy==2.0.41
     # via pybids
 svgutils==0.3.4
     # via niworkflows
-tedana==25.0.0
+tedana==25.0.1
     # via nibabies (pyproject.toml)
 templateflow==24.2.2
     # via
@@ -422,13 +413,13 @@ threadpoolctl==3.6.0
     # via
     #   scikit-learn
     #   tedana
-tifffile==2025.5.10
+tifffile==2025.6.11
     # via scikit-image
 toml==0.10.2
     # via
     #   nibabies (pyproject.toml)
     #   sdcflows
-tornado==6.5
+tornado==6.5.1
     # via bokeh
 tqdm==4.67.1
     # via
@@ -441,10 +432,9 @@ traits==7.0.2
     # via nipype
 transforms3d==0.4.2
     # via niworkflows
-typing-extensions==4.13.2
+typing-extensions==4.14.0
     # via
     #   formulaic
-    #   nibabel
     #   sqlalchemy
 tzdata==2025.2
     # via pandas
@@ -458,5 +448,3 @@ wrapt==1.17.2
     # via formulaic
 xyzservices==2025.4.0
     # via bokeh
-zipp==3.21.0
-    # via importlib-metadata