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FIX: Use corrected T2w file
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  • nibabies/workflows/anatomical

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nibabies/workflows/anatomical/base.py

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -417,7 +417,9 @@ def init_infant_anat_wf(
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(inputnode, surface_recon_wf, [
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("subject_id", "inputnode.subject_id"),
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("subjects_dir", "inputnode.subjects_dir"),
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("t2w", "inputnode.t2w"),
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]),
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(coregistration_wf, surface_recon_wf, [
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("outputnode.t2w_preproc", "inputnode.t2w"),
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]),
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(anat_seg_wf, surface_recon_wf, [
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("outputnode.anat_aseg", "inputnode.ants_segs"),

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