Merge pull request #418 from mgxd/enh/reg-modality

ENH: Expand template registration to use either anatomical modality

Author: mgxd

nibabies/workflows/anatomical/fit.py

@@ -904,6 +904,7 @@ def init_infant_anat_fit_wf(
             sloppy=sloppy,
             omp_nthreads=omp_nthreads,
             templates=templates,
+            image_type=reference_anat,
         )
         ds_template_registration_wf = init_ds_template_registration_wf(
             output_dir=str(output_dir),
@@ -1729,6 +1730,7 @@ def init_infant_single_anat_fit_wf(
             sloppy=sloppy,
             omp_nthreads=omp_nthreads,
             templates=templates,
+            image_type=reference_anat,
         )
         ds_template_registration_wf = init_ds_template_registration_wf(
             output_dir=str(output_dir),

pyproject.toml

@@ -25,15 +25,16 @@ dependencies = [
     "nireports >= 23.2.0",
     "nitime",
     "nitransforms >= 23.0.1",
-    "niworkflows >= 1.11.0",
+    "niworkflows >= 1.12.1",
     "numpy >= 1.21.0",
     "packaging",
     "pandas",
     "psutil >= 5.4",
     "pybids >= 0.15.0",
     "requests",
     "sdcflows >= 2.10.0",
-    "smriprep >= 0.16.1",
+#    "smriprep >= 0.16.1",
+    "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
     "tedana >= 23.0.2",
     "templateflow >= 24.2.0",
     "toml",