Merge pull request #285 from nipreps/dep/preps

DEP: Test with latest preps

Author: mgxd

nibabies/workflows/bold/base.py

@@ -1156,6 +1156,9 @@ def init_func_preproc_wf(bold_file, has_fieldmap=False, existing_derivatives=Non
             ("outputnode.boldref_file", "inputnode.target_ref")]),
         (initial_boldref_wf, coeff2epi_wf, [
             ("outputnode.boldref_mask", "inputnode.target_mask")]),  # skull-stripped brain
+        (initial_boldref_wf, unwarp_wf, [
+            ("outputnode.boldref_file", "inputnode.distorted_ref"),
+        ]),
         (coeff2epi_wf, unwarp_wf, [
             ("outputnode.fmap_coeff", "inputnode.fmap_coeff")]),
         (initial_boldref_wf, sdc_report, [("outputnode.boldref_file", "before")]),
@@ -1181,11 +1184,11 @@ def init_func_preproc_wf(bold_file, has_fieldmap=False, existing_derivatives=Non
             ]),
             (unwarp_wf, bold_t1_trans_wf, [
                 # TEMPORARY: For the moment we can't use frame-wise fieldmaps
-                (("outputnode.fieldwarp", pop_file), "inputnode.fieldwarp"),
+                (("outputnode.fieldwarp_ref", pop_file), "inputnode.fieldwarp"),
             ]),
             (unwarp_wf, bold_std_trans_wf, [
                 # TEMPORARY: For the moment we can't use frame-wise fieldmaps
-                (("outputnode.fieldwarp", pop_file), "inputnode.fieldwarp"),
+                (("outputnode.fieldwarp_ref", pop_file), "inputnode.fieldwarp"),
             ]),
         ])
         # fmt:on

pyproject.toml

@@ -24,15 +24,18 @@ dependencies = [
     "nipype >= 1.8.1",
     "nitime",
     "nitransforms >= 21.0.0",
-    "niworkflows ~= 1.7.1",
+#    "niworkflows ~= 1.7.9",
+    "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
     "numpy >= 1.21.0",
     "packaging",
     "pandas",
     "psutil >= 5.4",
     "pybids >= 0.15.0",
     "requests",
-    "sdcflows ~= 2.2.2",
-    "smriprep ~= 0.11.0",
+#    "sdcflows ~= 2.4.3",
+    "sdcflows @ git+https://github.com/nipreps/sdcflows.git@master",
+#    "smriprep ~= 0.11.0",
+    "smriprep @ git+https://github.com/nipreps/smriprep.git@master",
     "tedana ~= 0.0.12",
     "templateflow >= 0.6",
     "toml",