FIX: Explicitly set extension, revert fsnative to grab infantfs file

Author: mgxd

nibabies/workflows/anatomical/outputs.py

@@ -375,7 +375,11 @@ def init_anat_derivatives_wf(
 
     ds_anat_ribbon = pe.Node(
         DerivativesDataSink(
-            base_directory=output_dir, desc="ribbon", suffix="mask", compress=True
+            base_directory=output_dir,
+            desc="ribbon",
+            suffix="mask",
+            extension=".nii.gz",
+            compress=True,
         ),
         name="ds_anat_ribbon",
         run_without_submitting=True,

nibabies/workflows/bold/resampling.py

@@ -195,7 +195,8 @@ def select_target(subject_id, space):
             ("source_file", "src_file"),
             ("t1w2fsnative_xfm", "in_file"),
         ]),
-        (get_fsnative, itk2lta, [("T1", "dst_file")]),
+        # TODO: Dynamically adjust based on MCRIBS/InfantFS/FS
+        (get_fsnative, itk2lta, [('brain', 'dst_file')]),  # InfantFS: Use brain instead of T1
         (inputnode, sampler, [
             ("subjects_dir", "subjects_dir"),
             ("subject_id", "subject_id"),