Skip to content

Commit b1ec6e1

Browse files
committed
RF: Reflect changes on import/initialization
1 parent 0581d4f commit b1ec6e1

File tree

1 file changed

+9
-5
lines changed
  • nibabies/workflows/anatomical

1 file changed

+9
-5
lines changed

nibabies/workflows/anatomical/base.py

Lines changed: 9 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -93,10 +93,10 @@ def init_infant_anat_wf(
9393
init_anat_reports_wf,
9494
init_coreg_report_wf,
9595
)
96-
from .preproc import init_anat_average_wf
9796
from .registration import init_coregistration_wf
9897
from .segmentation import init_anat_segmentations_wf
9998
from .surfaces import init_anat_ribbon_wf
99+
from .template import init_anat_template_wf
100100

101101
# for now, T1w only
102102
num_t1w = len(t1w) if t1w else 0
@@ -201,17 +201,21 @@ def init_infant_anat_wf(
201201
)
202202

203203
# Multiple T1w files -> generate average reference
204-
t1w_template_wf = init_anat_average_wf(
204+
t1w_template_wf = init_anat_template_wf(
205+
contrast="T1w",
206+
num_files=num_t1w,
205207
longitudinal=longitudinal,
206208
omp_nthreads=omp_nthreads,
207-
num_maps=num_t1w,
209+
sloppy=sloppy,
208210
name="t1w_template_wf",
209211
)
210212

211-
t2w_template_wf = init_anat_average_wf(
213+
t2w_template_wf = init_anat_template_wf(
214+
contrast="T2w",
215+
num_files=num_t2w,
212216
longitudinal=longitudinal,
213217
omp_nthreads=omp_nthreads,
214-
num_maps=num_t2w,
218+
sloppy=sloppy,
215219
name="t2w_template_wf",
216220
)
217221

0 commit comments

Comments
 (0)