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infant_recon_all
1 parent 9cb268b commit be1e869Copy full SHA for be1e869
nibabies/workflows/anatomical/base.py
@@ -363,10 +363,12 @@ def init_infant_anat_wf(
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if not freesurfer:
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return wf
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+ # if running with precomputed aseg, or JLF, pass the aseg along to FreeSurfer
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+ use_aseg = bool(precomp_aseg) or bool(segmentation_atlases)
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# FreeSurfer surfaces
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surface_recon_wf = init_infant_surface_recon_wf(
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age_months=age_months,
- use_aseg=bool(segmentation_atlases),
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+ use_aseg=use_aseg,
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)
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# fmt:off
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