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lines changed Original file line number Diff line number Diff line change @@ -334,7 +334,8 @@ jobs:
334334 --nthreads 4 -vv --age-months 2 --sloppy \
335335 --surface-recon-method infantfs \
336336 --derivatives precomputed=/tmp/data/${DATASET}/derivatives/bibsnet \
337- --output-layout bids --anat-only
337+ --output-layout bids --anat-only \
338+ --no-multi-step-reg
338339 - run :
339340 name : Checking outputs of anatomical nibabies run
340341 command : |
@@ -363,7 +364,8 @@ jobs:
363364 --nthreads 4 -vv --age-months 2 --sloppy \
364365 --surface-recon-method infantfs \
365366 --derivatives precomputed=/tmp/data/${DATASET}/derivatives/bibsnet \
366- --output-layout bids
367+ --output-layout bids \
368+ --no-multi-step-reg
367369 - run :
368370 name : Checking outputs of full nibabies run
369371 command : |
@@ -400,7 +402,6 @@ jobs:
400402 nibabies-wrapper docker /tmp/data/${DATASET}-t2only /tmp/${DATASET}/derivatives/nibabies-t2only participant \
401403 -i nipreps/nibabies:dev \
402404 -e NIBABIES_DEV 1 --user $(id -u):$(id -g) \
403- --network none --notrack \
404405 --config $PWD/nipype.cfg -w /tmp/${DATASET}/work-t2only \
405406 --fs-subjects-dir /tmp/data/${DATASET}/derivatives/infant-freesurfer \
406407 --skull-strip-template UNCInfant:cohort-1 \
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