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ci: disable multi-step-reg when simulating no network
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.circleci/config.yml

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -334,7 +334,8 @@ jobs:
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--nthreads 4 -vv --age-months 2 --sloppy \
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--surface-recon-method infantfs \
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--derivatives precomputed=/tmp/data/${DATASET}/derivatives/bibsnet \
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--output-layout bids --anat-only
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--output-layout bids --anat-only \
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--no-multi-step-reg
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- run:
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name: Checking outputs of anatomical nibabies run
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command: |
@@ -363,7 +364,8 @@ jobs:
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--nthreads 4 -vv --age-months 2 --sloppy \
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--surface-recon-method infantfs \
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--derivatives precomputed=/tmp/data/${DATASET}/derivatives/bibsnet \
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--output-layout bids
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--output-layout bids \
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--no-multi-step-reg
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- run:
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name: Checking outputs of full nibabies run
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command: |
@@ -400,7 +402,6 @@ jobs:
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nibabies-wrapper docker /tmp/data/${DATASET}-t2only /tmp/${DATASET}/derivatives/nibabies-t2only participant \
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-i nipreps/nibabies:dev \
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-e NIBABIES_DEV 1 --user $(id -u):$(id -g) \
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--network none --notrack \
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--config $PWD/nipype.cfg -w /tmp/${DATASET}/work-t2only \
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--fs-subjects-dir /tmp/data/${DATASET}/derivatives/infant-freesurfer \
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--skull-strip-template UNCInfant:cohort-1 \

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