dkr: downgrade to 3.12 to show nipype crashes

Author: mgxd

.github/workflows/pytest.yml

@@ -31,7 +31,7 @@ jobs:
         dependencies: [ 'latest', 'pre' ]
         include:
         - os: ubuntu-latest
-          python-version: '3.13'
+          python-version: '3.12'
           dependencies: 'min'
 
     env:

env.yml

@@ -4,7 +4,7 @@ channels:
 - conda-forge
 # Update this ~yearly; last updated June 12 2025
 dependencies:
-- python=3.13
+- python=3.12
 # Needed for svgo and bids-validator; consider moving to deno
 - nodejs=20
 # Intel Math Kernel Library for numpy

requirements.txt

@@ -28,13 +28,13 @@ bidsschematools==1.0.10
     # via bids-validator
 bokeh==3.6.3
     # via tedana
-boto3==1.38.35
+boto3==1.38.36
     # via datalad
-botocore==1.38.35
+botocore==1.38.36
     # via
     #   boto3
     #   s3transfer
-certifi==2025.4.26
+certifi==2025.6.15
     # via requests
 chardet==5.2.0
     # via datalad
@@ -74,7 +74,7 @@ fasteners==0.19
     # via datalad
 filelock==3.18.0
     # via nipype
-fonttools==4.58.2
+fonttools==4.58.4
     # via matplotlib
 formulaic==1.1.1
     # via pybids
@@ -165,7 +165,7 @@ more-itertools==10.7.0
     #   datalad-next
     #   jaraco-classes
     #   jaraco-functools
-msgpack==1.1.0
+msgpack==1.1.1
     # via datalad
 networkx==3.5
     # via
@@ -385,7 +385,7 @@ seaborn==0.13.2
     #   nireports
     #   niworkflows
     #   tedana
-simpleitk==2.5.0
+simpleitk==2.5.2
     # via nibabies (pyproject.toml)
 simplejson==3.20.1
     # via nipype

wrapper/src/nibabies_wrapper/__main__.py

@@ -29,7 +29,7 @@
 MISSING = """
 Image '{}' is missing
 Would you like to download? [Y/n] """
-PKG_PATH = '/opt/conda/envs/nibabies/lib/python3.13/site-packages'
+PKG_PATH = '/opt/conda/envs/nibabies/lib/python3.12/site-packages'
 TF_TEMPLATES = (
     'MNI152Lin',
     'MNI152NLin2009cAsym',