MAINT: Bump container python to 3.9 (#221)

Author: mgxd

Dockerfile

@@ -260,12 +260,12 @@ RUN useradd -m -s /bin/bash -G users nibabies
 WORKDIR /home/nibabies
 ENV HOME="/home/nibabies"
 
-COPY --from=nipreps/miniconda@sha256:ebbff214e6c9dc50ccc6fdbe679df1ffcbceaa45b47a75d6e34e8a064ef178da /opt/conda /opt/conda
+# py39_0525.0
+COPY --from=nipreps/miniconda@sha256:40fffd37963502dcd8549773559fc21182f52460e59e0ad6398a84faf6055641 /opt/conda /opt/conda
 
-# Installing and setting up miniconda
-RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda3-py38_4.9.2-Linux-x86_64.sh && \
-    bash Miniconda3-py38_4.9.2-Linux-x86_64.sh -b -p /usr/local/miniconda && \
-    rm Miniconda3-py38_4.9.2-Linux-x86_64.sh
+RUN ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh && \
+    echo ". /opt/conda/etc/profile.d/conda.sh" >> ~/.bashrc && \
+    echo "conda activate base" >> ~/.bashrc
 
 # Set CPATH for packages relying on compiled libs (e.g. indexed_gzip)
 ENV PATH="/opt/conda/bin:$PATH" \

wrapper/nibabies_wrapper.py

@@ -26,7 +26,7 @@
 MISSING = """
 Image '{}' is missing
 Would you like to download? [Y/n] """
-PKG_PATH = "/opt/conda/lib/python3.8/site-packages"
+PKG_PATH = "/opt/conda/lib/python3.9/site-packages"
 TF_TEMPLATES = (
     "MNI152Lin",
     "MNI152NLin2009cAsym",