fix: bump nitransforms and adapt to transposed coordinates

Author: mgxd

nibabies/interfaces/resampling.py

@@ -561,7 +561,7 @@ def resample_image(
         hmc = []
 
     # Retrieve the RAS coordinates of the target space
-    coordinates = nt.base.SpatialReference.factory(target).ndcoords.astype('f4').T
+    coordinates = nt.base.SpatialReference.factory(target).ndcoords.astype('f4')
 
     # We will operate in voxel space, so get the source affine
     vox2ras = source.affine

pyproject.toml

@@ -24,7 +24,7 @@ dependencies = [
     "nipype >= 1.8.5",
     "nireports >= 23.2.0",
     "nitime",
-    "nitransforms >= 24.1.1",
+    "nitransforms >= 25.0.1",
     "niworkflows >= 1.14.1",
     "numpy >= 1.21.0",
     "packaging",
@@ -35,7 +35,7 @@ dependencies = [
     "sdcflows >= 2.13.0",
     "smriprep >= 0.19.1",
     "tedana >= 23.0.2",
-    "templateflow >= 24.2.0",
+    "templateflow >= 25.0.3",
     "toml",
     "typing_extensions; python_version<'3.11'",
 ]