diff --git a/nibabies/workflows/anatomical/resampling.py b/nibabies/workflows/anatomical/resampling.py index 16e2870c..410927a9 100644 --- a/nibabies/workflows/anatomical/resampling.py +++ b/nibabies/workflows/anatomical/resampling.py @@ -5,7 +5,7 @@ import templateflow.api as tf from niworkflows.engine.workflows import LiterateWorkflow from smriprep.interfaces.workbench import SurfaceResample -from smriprep.workflows.surfaces import _collate, init_morph_grayords_wf +from smriprep.workflows.surfaces import init_morph_grayords_wf from nibabies.config import DEFAULT_MEMORY_MIN_GB from nibabies.data import load as load_data @@ -296,3 +296,7 @@ def _get_surf(surfaces, name, mult=1): def _triple(in_list): return in_list * 3 + + +def _collate(files): + return [files[i : i + 2] for i in range(0, len(files), 2)] diff --git a/pyproject.toml b/pyproject.toml index 45c68016..2c6fd2c0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,7 @@ dependencies = [ "pybids >= 0.15.0", "requests", "SimpleITK", - "sdcflows @ git+https://github.com/nipreps/sdcflows.git@master", + "sdcflows @ git+https://github.com/nipreps/sdcflows.git@main", "smriprep >= 0.17.0", "tedana >= 23.0.2", "templateflow >= 24.2.0",