ENH: Store bold realignment results in reachable path

jhlegarreta · jhlegarreta · commit c268d0424b0e · 2025-01-19T14:12:01.000-05:00
Store bold realignment results in a folder that actually exists. Fixes: ``` FAILED docs/notebooks/bold_realignment.ipynb::bold_realignment.ipynb - PermissionError: [Errno 13] Permission denied: '/data/derivatives' ``` raised for example in: https://github.com/nipreps/nifreeze/actions/runs/12847776534/job/35824459079?pr=35#step:12:1684
diff --git a/docs/notebooks/bold_realignment.ipynb b/docs/notebooks/bold_realignment.ipynb
@@ -34,7 +34,7 @@
     "WORKDIR = Path.home() / \"tmp\" / \"nifreezedev\" / \"ismrm25\"\n",
     "WORKDIR.mkdir(parents=True, exist_ok=True)\n",
     "\n",
-    "OUTPUT_DIR = Path(\"/data/derivatives\") / \"nifreeze-ismrm25-exp2\"\n",
+    "OUTPUT_DIR = Path.home() / \"tmp\" / \"nifreezedev\" / \"ismrm25\" / \"nifreeze-ismrm25-exp2\"\n",
     "OUTPUT_DIR.mkdir(exist_ok=True, parents=True)"
    ]
   },

Original file line number	Diff line number	Diff line change
`@@ -34,7 +34,7 @@`
`34`	`34`	`"WORKDIR = Path.home() / \"tmp\" / \"nifreezedev\" / \"ismrm25\"\n",`
`35`	`35`	`"WORKDIR.mkdir(parents=True, exist_ok=True)\n",`
`36`	`36`	`"\n",`
`37`		`- "OUTPUT_DIR = Path(\"/data/derivatives\") / \"nifreeze-ismrm25-exp2\"\n",`
	`37`	`+ "OUTPUT_DIR = Path.home() / \"tmp\" / \"nifreezedev\" / \"ismrm25\" / \"nifreeze-ismrm25-exp2\"\n",`
`38`	`38`	`"OUTPUT_DIR.mkdir(exist_ok=True, parents=True)"`
`39`	`39`	`]`
`40`	`40`	`},`