Merge pull request #111 from jhlegarreta/RefactorDataDownloadNotebokCI

TST: Download data from G-Node GIN in notebook testing GHA workflow

Author: jhlegarreta

.github/workflows/notebooks.yml

@@ -6,9 +6,27 @@ on:
   # Allow job to be triggered manually from GitHub interface
   workflow_dispatch:
 
+defaults:
+  run:
+    shell: bash
+
+# Force tox and pytest to use color
+env:
+  FORCE_COLOR: true
+  TEST_DATA_HOME: /home/runner/nifreeze-tests/
+  NIFREEZE_WERRORS: 1
+  TEST_DATA_REPO: https://gin.g-node.org/nipreps-data/tests-nifreeze
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  contents: read
+
 jobs:
   run-notebooks:
-    runs-on: ubuntu-latest
+    runs-on: 'ubuntu-latest'
 
     strategy:
       matrix:
@@ -23,6 +41,11 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
+      - name: Download data file from G-Node GIN
+        run: |
+          mkdir ${TEST_DATA_HOME}
+          curl -L -o "${TEST_DATA_HOME}/hcpdata.npz" https://gin.g-node.org/nipreps-data/tests-nifreeze/src/master/hcpdata.npz
+
       - name: Install TeX Live
         run: |
           sudo apt-get update
@@ -46,11 +69,9 @@ jobs:
           python -m pip install --upgrade pip
           pip install tox
 
-      - name: Download data
+      - name: Download data from OpenNeuro
         run: |
-          DATA_PATH="${{ env.TEST_DATA_HOME || github.workspace }}/nifreeze-tests"
-          mkdir -p "$DATA_PATH"
-          bash scripts/fetch_fmri_nb_openneuro_data.sh "$DATA_PATH"
+          ${{ github.workspace }}/scripts/fetch_fmri_nb_openneuro_data.sh "${TEST_DATA_HOME}"
 
       - name: Run notebooks with tox
         run: tox -e notebooks