enh: continue working on BIDS' slides

Author: oesteban

docs/assets/fmriprep-bootcamp-geneva2024/day1-02-bids/index.html

@@ -446,37 +446,37 @@
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 * BIDS is a directory structure, based on common practices
 
 * Builds on existing standards (NIfTI, JSON, TSV)
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-.right-column2[
-* Basic metadata in the file names
-
+.right-column2[.no-bullet[* .larger[Basic metadata in the file names]
   * Subject, session, imaging modality, etc.
-  * Generally just enough to assign unique names
-]
-
+  * Generally just enough to assign unique names]]
 --
-.right-column2[
-* NIfTI headers and JSON sidecars contain detailed,
-  image-related metadata
-]
+.right-column2[.no-bullet[* .larger[NIfTI headers and *JSON sidecars* contain detailed,
+  image-related metadata]]]
 --
-.right-column2[
-* [`dataset_description.json`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#dataset_descriptionjson),
-  [`participants.tsv`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#participants-file),
-  [`sessions.tsv`](https://bids-specification.readthedocs.io/en/stable/05-longitudinal-and-multi-site-studies.html#sessions-file),
-  and [`scans.tsv`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#scans-file)
-  record study-level metadata that may not be associated
-  with specific images
-]
-
----
-layout: true
-template: newsection
+.right-column2[.no-bullet[* .larger[Study-level metadata]
+  * Not necessarily associated with specific files
+  * [`dataset_description.json`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#dataset_descriptionjson),
+    [`participants.tsv`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#participants-file),
+    [`sessions.tsv`](https://bids-specification.readthedocs.io/en/stable/05-longitudinal-and-multi-site-studies.html#sessions-file),
+    and [`scans.tsv`](https://bids-specification.readthedocs.io/en/stable/03-modality-agnostic-files.html#scans-file)
+]]
 
 ---
 
-# Bidsification
+# Converting from DICOM into BIDS
 
-Constructing a BIDS dataset can be tedious and error-prone, so there are several
-[converters](https://bids.neuroimaging.io/benefits.html#converters).
 
-<figure style="width: 50%">
-![:img DICOM to BIDS conversion, 100%](images/dicom-reorganization-transparent-black_1000x477.png)
-</figure>
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+.pad-left[<i class="fa-solid fa-folder"></i> sub-14]<br />
+.pad-left[<i class="fa-solid fa-folder"></i> sub-15]<br />
+]
+]
 
-DICOM images store their relevant metadata internally, but naming conventions tend
-to be scanner/institution-specific.
+.right-column-mid[
+.no-bullet[
+* .larger[DICOM (Digital Imaging and Communications in Medicine)]
+   * was originally meant for storage and transmission within/between machines.
+* .larger[DICOM structures store their relevant metadata internally,]
+   * but structure and fields tend to be vendor- & institution-specific.
 
-The [Heuristic DICOM Converter](https://heudiconv.readthedocs.io/) (HeuDiConv) and
+* .larger[Constructing a BIDS dataset can be tedious and error-prone, so there are several
+[converters](https://bids.neuroimaging.io/benefits.html#converters).] 
+   * The [Heuristic DICOM Converter](https://heudiconv.readthedocs.io/) (HeuDiConv) and
 [BIDSCoin](https://bidscoin.readthedocs.io/en/stable/) allow you to specify the mapping and
 apply in bulk. Both build off of [dcm2niix](https://github.com/rordenlab/dcm2niix/).
+]
+]
+
+---
+
+# Converting from DICOM into BIDS
+
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+.pad-left[.pad-left[<i class="fa-solid fa-table"></i> sub-11_scans.tsv]]<br />
+.pad-left[<i class="fa-solid fa-folder"></i> sub-14]<br />
+.pad-left[<i class="fa-solid fa-folder"></i> sub-15]<br />
+]
+]
+
+<i class="fa-solid fa-circle-right" style="margin-top: 20%; font-size: 1.7em"></i>
 
 ---