FIX: add debug option to workflow call

eilidhmacnicol · eilidhmacnicol · commit 93393e74fd4e · 2020-04-28T21:39:27.000+01:00
diff --git a/nirodents/cli/brainextraction.py b/nirodents/cli/brainextraction.py
@@ -37,6 +37,7 @@ def main():
     be = init_rodent_brain_extraction_wf(
         in_template=opts.template,
         omp_nthreads=opts.omp_nthreads,
+        debug=opts.debug
     )
     be.inputs.inputnode.in_files = opts.input_image
     nipype_plugin = {"plugin": "Linear"}

Original file line number	Diff line number	Diff line change
`@@ -37,6 +37,7 @@ def main():`
`37`	`37`	`be = init_rodent_brain_extraction_wf(`
`38`	`38`	`in_template=opts.template,`
`39`	`39`	`omp_nthreads=opts.omp_nthreads,`
	`40`	`+ debug=opts.debug`
`40`	`41`	`)`
`41`	`42`	`be.inputs.inputnode.in_files = opts.input_image`
`42`	`43`	`nipype_plugin = {"plugin": "Linear"}`