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fix: Pandas deprecation
1 parent f70d500 commit 0abb5a3

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-7
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1 file changed

+4
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niworkflows/interfaces/utility.py

Lines changed: 4 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -247,8 +247,7 @@ class AddTSVHeader(SimpleInterface):
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>>> addheader.inputs.in_file = 'data.tsv'
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>>> addheader.inputs.columns = ['a', 'b', 'c', 'd', 'e']
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>>> res = addheader.run()
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>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
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... index_col=None)
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>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
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>>> df.columns.ravel().tolist()
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['a', 'b', 'c', 'd', 'e']
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@@ -308,7 +307,7 @@ class JoinTSVColumns(SimpleInterface):
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>>> join.inputs.in_file = 'data.tsv'
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>>> join.inputs.join_file = 'add.tsv'
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>>> res = join.run()
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>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
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>>> df = pd.read_csv(res.outputs.out_file, sep='\s+',
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... index_col=None, dtype=float, header=None)
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>>> df.columns.ravel().tolist() == list(range(5))
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True
@@ -325,8 +324,7 @@ class JoinTSVColumns(SimpleInterface):
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>>> res = join.run()
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>>> res.outputs.out_file # doctest: +ELLIPSIS
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'...data_joined.tsv'
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>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
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... index_col=None)
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>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
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>>> df.columns.ravel().tolist()
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['a', 'b', 'c', 'd', 'e']
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@@ -339,8 +337,7 @@ class JoinTSVColumns(SimpleInterface):
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>>> join.inputs.side = 'left'
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>>> join.inputs.columns = ['a', 'b', 'c', 'd', 'e']
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>>> res = join.run()
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>>> df = pd.read_csv(res.outputs.out_file, delim_whitespace=True,
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... index_col=None)
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>>> df = pd.read_csv(res.outputs.out_file, sep='\s+', index_col=None)
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>>> df.columns.ravel().tolist()
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['a', 'b', 'c', 'd', 'e']
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