MNT: Construct requirements.in file and run pip-compile

Author: effigies

requirements.in

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+# Hints to pip-compile that combine the requirements in setup.cfg
+# and the environment pinned in fMRIPrep 20.2.x's docker/files/environment.yml
+#
+# Some dependencies need old versions of setuptools to resolve. The following environment
+# currently builds:
+#
+#  python==3.7 pip-tools setuptools<58
+#
+attrs
+jinja2
+h5py==3.5
+matplotlib==2.2.2
+nibabel >= 3.0.1
+nilearn == 0.7
+nipype >= 1.5.1, != 1.7.0
+nitransforms >= 20.0.0rc3,<20.2
+numpy==1.19
+packaging
+pandas==0.24
+pybids >= 0.11.1, < 0.15
+PyYAML
+scikit-image
+scikit-learn==0.21
+scipy==1.5
+seaborn==0.11.2
+svgutils == 0.3.1
+templateflow >= 0.6,<23
+traits==4.6.0
+transforms3d

requirements.txt

@@ -0,0 +1,217 @@
+#
+# This file is autogenerated by pip-compile with Python 3.7
+# by the following command:
+#
+#    pip-compile --resolver=backtracking
+#
+astor==0.8.1
+    # via formulaic
+attrs==22.2.0
+    # via -r requirements.in
+bids-validator==1.11.0
+    # via pybids
+cached-property==1.5.2
+    # via h5py
+certifi==2022.12.7
+    # via requests
+charset-normalizer==3.1.0
+    # via requests
+ci-info==0.3.0
+    # via etelemetry
+click==8.1.3
+    # via
+    #   nipype
+    #   pybids
+cycler==0.11.0
+    # via matplotlib
+docopt==0.6.2
+    # via num2words
+etelemetry==0.3.0
+    # via nipype
+filelock==3.11.0
+    # via nipype
+formulaic==0.2.4
+    # via pybids
+h5py==3.5.0
+    # via
+    #   -r requirements.in
+    #   nitransforms
+idna==3.4
+    # via requests
+imageio==2.27.0
+    # via scikit-image
+importlib-metadata==4.13.0
+    # via
+    #   click
+    #   rdflib
+interface-meta==1.3.0
+    # via formulaic
+isodate==0.6.1
+    # via rdflib
+jinja2==3.1.2
+    # via -r requirements.in
+joblib==1.2.0
+    # via
+    #   nilearn
+    #   scikit-learn
+kiwisolver==1.4.4
+    # via matplotlib
+looseversion==1.1.2
+    # via nipype
+lxml==4.9.2
+    # via
+    #   prov
+    #   svgutils
+markupsafe==2.1.2
+    # via jinja2
+matplotlib==2.2.2
+    # via
+    #   -r requirements.in
+    #   seaborn
+networkx==2.6.3
+    # via
+    #   nipype
+    #   prov
+    #   scikit-image
+nibabel==4.0.2
+    # via
+    #   -r requirements.in
+    #   nilearn
+    #   nipype
+    #   nitransforms
+    #   pybids
+nilearn==0.7.0
+    # via -r requirements.in
+nipype==1.8.6
+    # via -r requirements.in
+nitransforms==20.0.0rc5
+    # via -r requirements.in
+num2words==0.5.12
+    # via pybids
+numpy==1.19.0
+    # via
+    #   -r requirements.in
+    #   formulaic
+    #   h5py
+    #   imageio
+    #   matplotlib
+    #   nibabel
+    #   nilearn
+    #   nipype
+    #   nitransforms
+    #   pandas
+    #   pybids
+    #   pywavelets
+    #   scikit-image
+    #   scikit-learn
+    #   scipy
+    #   seaborn
+    #   tifffile
+packaging==23.1
+    # via
+    #   -r requirements.in
+    #   nibabel
+    #   nipype
+    #   scikit-image
+pandas==0.24.0
+    # via
+    #   -r requirements.in
+    #   formulaic
+    #   nilearn
+    #   pybids
+    #   seaborn
+pillow==9.5.0
+    # via
+    #   imageio
+    #   scikit-image
+prov==2.0.0
+    # via nipype
+pybids==0.14.1
+    # via
+    #   -r requirements.in
+    #   templateflow
+pydot==1.4.2
+    # via nipype
+pyparsing==3.0.9
+    # via
+    #   matplotlib
+    #   pydot
+    #   rdflib
+python-dateutil==2.8.2
+    # via
+    #   matplotlib
+    #   nipype
+    #   pandas
+    #   prov
+pytz==2023.3
+    # via
+    #   matplotlib
+    #   pandas
+pywavelets==1.3.0
+    # via scikit-image
+pyyaml==6.0
+    # via -r requirements.in
+rdflib==6.3.2
+    # via
+    #   nipype
+    #   prov
+requests==2.28.2
+    # via
+    #   etelemetry
+    #   nilearn
+    #   templateflow
+scikit-image==0.19.3
+    # via -r requirements.in
+scikit-learn==0.21.0
+    # via
+    #   -r requirements.in
+    #   nilearn
+scipy==1.5.0
+    # via
+    #   -r requirements.in
+    #   formulaic
+    #   nilearn
+    #   nipype
+    #   nitransforms
+    #   pybids
+    #   scikit-image
+    #   scikit-learn
+    #   seaborn
+seaborn==0.11.2
+    # via -r requirements.in
+simplejson==3.19.1
+    # via nipype
+six==1.16.0
+    # via
+    #   isodate
+    #   matplotlib
+    #   python-dateutil
+sqlalchemy==1.3.24
+    # via pybids
+svgutils==0.3.1
+    # via -r requirements.in
+templateflow==0.8.1
+    # via -r requirements.in
+tifffile==2021.11.2
+    # via scikit-image
+tqdm==4.65.0
+    # via templateflow
+traits==4.6.0
+    # via
+    #   -r requirements.in
+    #   nipype
+transforms3d==0.4.1
+    # via -r requirements.in
+typing-extensions==4.5.0
+    # via
+    #   importlib-metadata
+    #   kiwisolver
+urllib3==1.26.15
+    # via requests
+wrapt==1.15.0
+    # via formulaic
+zipp==3.15.0
+    # via importlib-metadata
+
+# The following packages are considered to be unsafe in a requirements file:
+# setuptools