1+ {
2+ "collapse_output_transforms" : true ,
3+ "convergence_threshold" : [1e-6 , 1e-6 , 1e-6 ],
4+ "convergence_window_size" : [20 , 20 , 10 ],
5+ "dimension" : 3 ,
6+ "interpolation" : " Linear" ,
7+ "metric" : [" Mattes" , " Mattes" , " Mattes" ],
8+ "metric_weight" : [1 , 1 , 1 ],
9+ "number_of_iterations" : [[1000 , 500 , 250 ], [500 , 250 , 100 ], [100 , 50 , 30 ]],
10+ "output_transform_prefix" : " pet_to_mni" ,
11+ "output_warped_image" : true ,
12+ "radius_or_number_of_bins" : [32 , 32 , 32 ],
13+ "sampling_percentage" : [0.5 , 0.5 , 1.0 ],
14+ "sampling_strategy" : [" Regular" , " Regular" , " None" ],
15+ "shrink_factors" : [[4 , 2 , 1 ], [4 , 2 , 1 ], [4 , 2 , 1 ]],
16+ "sigma_units" : [" vox" , " vox" , " vox" ],
17+ "smoothing_sigmas" : [[6 , 3 , 1 ], [4 , 2 , 1 ], [2 , 1 , 0 ]],
18+ "transform_parameters" : [[0.1 ], [0.1 ], [0.1 , 3.0 , 0.0 ]],
19+ "transforms" : [" Rigid" , " Affine" , " SyN" ],
20+ "use_histogram_matching" : [true , true , true ],
21+ "winsorize_lower_quantile" : 0.01 ,
22+ "winsorize_upper_quantile" : 0.99 ,
23+ "write_composite_transform" : false
24+ }
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