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CHANGES.rst

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1.4.0 (TBD)
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===========
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1.4.0 (September 1, 2021)
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=========================
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First release in the 1.4.x series.
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This release includes enhancements and bug-fixes towards the release of the first
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beta version of *dMRIPrep*.
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* *You must cause any modified files to carry prominent notices stating that
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You changed the files*.
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A list of prominent changes follows:
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A list of prominent changes can be found below. (With thanks to Lea Waller for the contributions)
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1.4.0rc6 (May 17, 2021)
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-----------------------
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* DOC: Ensure copyright notice in all headers' comment (#635)
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* FIX: Set slope and intercept to 1/0 if not otherwise provided (#649)
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* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#647)
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* FIX: ``FSDetectInputs`` mutually exclusive options for ``ReconAll`` (#646)
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* FIX: Remove pandas warning about use of keyword arguments (#645)
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* FIX: Improve ``SimpleBeforeAfterRPT`` contour visibility (#643)
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* FIX: ``DerivativesDataSink`` dismissing entity writing reportlet (#638)
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* FIX: Ensure ``IntensityClip`` input is a 3D file (#621)
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* FIX: Limit memory usage in ``EstimateReferenceImage`` (#629)
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* FIX: Purge removed ``--disable`` flag from *svgo* call (#626)
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* FIX: Readd ``sbref_file`` input to reference volume interface (#624)
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* ENH: Update visual report specification with fieldmaps (#634)
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* ENH: Expose the output of the ``ValidateImage`` node as an output in EPI reference workflow (#636)
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* DOC: Ensure copyright notice in all headers' comment (#635)
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* MAINT: Pin *svgutils* to previous versions (#596)
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Prior 1.4.0rc6
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--------------
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* FIX: Update svgutils after breaking API changes (#620)
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* FIX: Address issues with ``RobustAverage`` global signal measurement (#607)
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* FIX: ``NonsteadyStatesDetector`` wrongly using Nipype's ``is_outlier`` (#605)
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* FIX: Allow omission of ``<res>`` for template normalization (#582)
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* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
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* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
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* ENH: Allow ``SimpleBeforeAfterRPT`` plotting of image rotated to cardinal axes (#650)
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* ENH: Update visual report specification with fieldmaps (#634)
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* ENH: Expose the output of the ``ValidateImage`` node as an output in EPI reference workflow (#636)
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* ENH: Add an inversion operation to ``IntensityClip`` (#616)
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* ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610)
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* ENH: Add a ``RobustAverage`` interface and split volume selection (#602)
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* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585)
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* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
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* MAINT: Pin *svgutils* to previous versions (#596)
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* MAINT: Drop gh-pages history, reducing repository size (#622)
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* MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609)
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* MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608)
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* MAINT: Move mask-regressions test-data to datalad + nipreps-data (#606)
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* MAINT: Refactor structure of interfaces (#603)
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* MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593)
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* MAINT: CircleCI housekeeping (#580)
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* RF: Write derivatives once, using deterministic gzip settings (#641)
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.. caution::
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1.3.0 (September 11, 2020)
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==========================
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First release in the 1.3.x series.
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This release includes enhancements and bug-fixes towards the release of the first
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This release includes enhancements and bug-fixes towards the release of the first
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LTS (*long-term support*) version of *fMRIPrep*.
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*PyBIDS* has been revised to use more recent versions, a series of ANTs' interfaces
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have been deemed ready to upstream into *Nipype*, and several improvements regarding

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