Select magnitude images in collect_data.

Author: tsalo

niworkflows/utils/bids.py

@@ -200,11 +200,11 @@ def collect_data(
 
     queries = {
         "fmap": {"datatype": "fmap"},
-        "bold": {"datatype": "func", "suffix": "bold"},
-        "sbref": {"datatype": "func", "suffix": "sbref"},
-        "flair": {"datatype": "anat", "suffix": "FLAIR"},
-        "t2w": {"datatype": "anat", "suffix": "T2w"},
-        "t1w": {"datatype": "anat", "suffix": "T1w"},
+        "bold": {"datatype": "func", "suffix": "bold", "part": ["mag", None]},
+        "sbref": {"datatype": "func", "suffix": "sbref", "part": ["mag", None]},
+        "flair": {"datatype": "anat", "suffix": "FLAIR", "part": ["mag", None]},
+        "t2w": {"datatype": "anat", "suffix": "T2w", "part": ["mag", None]},
+        "t1w": {"datatype": "anat", "suffix": "T1w", "part": ["mag", None]},
         "roi": {"datatype": "anat", "suffix": "roi"},
     }
     bids_filters = bids_filters or {}