Update niworkflows/func/util.py

oesteban · effigies · oesteban · commit df5c56b3fd03 · 2020-04-07T18:26:08.000-07:00
Co-Authored-By: Chris Markiewicz &lt;effigies@gmail.com&gt;
diff --git a/niworkflows/func/util.py b/niworkflows/func/util.py
@@ -325,7 +325,7 @@ def init_enhance_and_skullstrip_bold_wf(
                 'MNI152NLin2009cAsym', resolution=1, desc='brain', suffix='probseg'))),
             name='map_brainmask'
         )
-        binarize_mask = pe.Node(Binarize(thresh_low=0.75), name='binarize_mask')
+        binarize_mask = pe.Node(Binarize(thresh_low=0.5), name='binarize_mask')
         workflow.connect([
             (inputnode, init_aff, [('in_file', 'moving_image')]),
             (inputnode, map_brainmask, [('in_file', 'reference_image')]),

Original file line number	Diff line number	Diff line change
`@@ -325,7 +325,7 @@ def init_enhance_and_skullstrip_bold_wf(`
`325`	`325`	`'MNI152NLin2009cAsym', resolution=1, desc='brain', suffix='probseg'))),`
`326`	`326`	`name='map_brainmask'`
`327`	`327`	`)`
`328`		`- binarize_mask = pe.Node(Binarize(thresh_low=0.75), name='binarize_mask')`
	`328`	`+ binarize_mask = pe.Node(Binarize(thresh_low=0.5), name='binarize_mask')`
`329`	`329`	`workflow.connect([`
`330`	`330`	`(inputnode, init_aff, [('in_file', 'moving_image')]),`
`331`	`331`	`(inputnode, map_brainmask, [('in_file', 'reference_image')]),`