CI: Drop test_masks from CircleCI

Author: effigies

.circleci/config.yml

@@ -170,46 +170,6 @@ jobs:
             - fslicense
             - src/
 
-      - run:
-          name: Check if regression data must be downloaded
-          command: |
-            cd /tmp/src/niworkflows
-            set +e
-            test_masks="$( git log --format=oneline -n 1 $CIRCLE_SHA1 | grep -i -E '\[test[ _]?masks?\]' )$( echo $CIRCLE_BRANCH | grep -i -E '^masks?/' )"
-            set -e
-            if [[ "x${CIRCLE_TAG}" = "x" && "${CIRCLE_BRANCH}" != "master" && "x${test_masks}" = "x" ]]; then
-              echo "Not a tag or master branch, not a ``masks?/`` branch, no ``[test_masks]`` label in commit message"
-              echo "Skipping download of test data for mask regressions."
-              circleci step halt
-            fi
-
-      - restore_cache:
-          keys:
-            - mask-regressions-v2-{{ .Branch }}-{{ .Revision }}-
-            - mask-regressions-v2-{{ .Branch }}-
-            - mask-regressions-v2-master-
-            - mask-regressions-v2-
-      - run:
-          name: Setup TemplateFlow
-          command: |
-            python -c "from templateflow import api as tfapi; \
-                       tfapi.get('MNI152NLin2009cAsym', resolution=1, label='brain', suffix='probseg'); \
-                       tfapi.get('MNI152NLin2009cAsym', resolution=2, desc='fMRIPrep', suffix='boldref'); \
-                       tfapi.get('MNI152NLin2009cAsym', resolution=2, desc='brain', suffix='mask'); "
-      - run:
-          name: Install epi-references
-          command: |
-            if [[ ! -d epi-references ]]; then
-              datalad install -r https://github.com/nipreps-data/epi-references.git
-            fi
-            datalad update -r --merge -d epi-references/
-            datalad get -J 2 -r -d epi-references/ epi-references/*
-      - save_cache:
-          key: mask-regressions-v2-{{ .Branch }}-{{ .Revision }}-{{ epoch }}
-          paths:
-            - /tmp/templateflow
-            - /tmp/data/epi-references
-
   test_pytest:
     machine:
       image: ubuntu-2004:202104-01
@@ -313,127 +273,6 @@ jobs:
       - store_test_results:
           path: /tmp/tests/summaries/
 
-  test_masks:
-    machine:
-      image: ubuntu-2004:202104-01
-    working_directory: /tmp/masks
-    steps:
-      - attach_workspace:
-          at: /tmp
-
-      - run:
-          name: Determine whether regression tests (masks) must be executed
-          command: |
-            cd /tmp/src/niworkflows
-            set +e
-            test_masks="$( git log --format=oneline -n 1 $CIRCLE_SHA1 | grep -i -E '\[test[ _]?masks?\]' )$( echo $CIRCLE_BRANCH | grep -i -E '^masks?/' )"
-            set -e
-            if [[ "x${CIRCLE_TAG}" = "x" && "${CIRCLE_BRANCH}" != "master" && "x${test_masks}" = "x" ]]; then
-              echo "Not a tag or master branch, not a ``masks?/`` branch, no ``[test_masks]`` label in commit message"
-              echo "Skipping download of test data for mask regressions."
-              circleci step halt
-            fi
-
-      - restore_cache:
-          keys:
-            - mask-regressions-v2-{{ .Branch }}-{{ .Revision }}-
-            - mask-regressions-v2-{{ .Branch }}-
-
-      - restore_cache:
-          keys:
-            - build-v1-{{ .Branch }}-{{ .Revision }}
-            - build-v1--{{ .Revision }}
-            - build-v1-{{ .Branch }}-
-            - build-v1-master-
-            - build-v1-
-      - run:
-          name: Docker authentication
-          command: |
-            if [[ -n $DOCKER_PAT ]]; then
-              echo "$DOCKER_PAT" | docker login -u $DOCKER_USER --password-stdin
-            fi
-      - run:
-          name: Set up Docker registry
-          command: |
-            if [[ -f /tmp/images/registry.tar.gz ]]; then
-              echo "Loading saved registry image"
-              docker load < /tmp/images/registry.tar.gz
-            else
-              echo "Pulling registry image from DockerHub"
-              docker pull registry:2
-              mkdir -p /tmp/images
-              docker save registry:2 | gzip > /tmp/images/registry.tar.gz
-            fi
-            docker run -d -p 5000:5000 --restart=always --name=registry \
-                -v /tmp/docker:/var/lib/registry registry:2
-      - run:
-          name: Pull images to registry
-          command: |
-            docker pull localhost:5000/niworkflows
-            docker tag localhost:5000/niworkflows niworkflows:latest
-      - restore_cache:
-          keys:
-            - masks-workdir-v6-{{ .Branch }}-{{epoch}}
-            - masks-workdir-v6-{{ .Branch }}-
-            - masks-workdir-v6-master-
-            - masks-workdir-v6-
-      - run:
-          name: Run regression tests on EPI masks
-          no_output_timeout: 2h
-          command: |
-            mkdir -p /tmp/masks/{reports,workdir} && \
-            docker run -ti -u $(id -u) -w /src/niworkflows \
-              -v /tmp/templateflow:/templateflow \
-              -v /tmp/data/epi-references:/data -v /tmp/masks/reports:/tmp/masks/reports \
-              -e COVERAGE_FILE=/tmp/masks/reports/.coverage \
-              -e TEMPLATEFLOW_HOME=/templateflow -e TEMPLATEFLOW_AUTOUPDATE=off \
-              -e FMRIPREP_REGRESSION_SOURCE=/data \
-              -e FMRIPREP_REGRESSION_REPORTS=/tmp/masks/reports \
-              -e CACHED_WORK_DIRECTORY=/tmp/work -v /tmp/masks/workdir:/tmp/work \
-              -v /tmp/fslicense/license.txt:/opt/freesurfer/license.txt:ro \
-              niworkflows:latest \
-              coverage run -p --rcfile=setup.cfg \
-                     -m pytest --junit-xml=/tmp/masks/reports/regression.xml \
-                     niworkflows/func/tests/
-      - run:
-          name: Clear reports folder & delete plot generator cache
-          command: |
-            pushd reports/
-            tar cvfz fmriprep_bold_mask.tar.gz fmriprep_bold_mask/*/*.nii.gz
-            rm -rf /tmp/masks/reports/fmriprep_bold_mask/
-            popd
-            find workdir/ -name "mask_diff_plot" -exec rm -rf {} +
-      - store_artifacts:
-          path: /tmp/masks/reports
-      - store_test_results:
-          path: /tmp/masks/reports
-      - save_cache:
-         key: masks-workdir-v6-{{ .Branch }}-{{ epoch }}
-         paths:
-            - /tmp/masks/workdir
-
-      - run:
-          name: Coverage preparation
-          command: |
-            docker run -ti -u $(id -u) -w /tmp/masks/reports \
-              -e COVERAGE_FILE=/tmp/masks/reports/.coverage \
-              -v /tmp/masks/reports:/tmp/masks/reports \
-              niworkflows:latest coverage combine
-            docker run -ti -u $(id -u) -w /tmp/masks/reports \
-              -e COVERAGE_FILE=/tmp/masks/reports/.coverage \
-              -v /tmp/masks/reports:/tmp/masks/reports \
-              niworkflows:latest coverage xml -o coverage.xml
-      - run:
-          name: Get codecov
-          command: python -m pip install codecov
-      - run:
-          name: Submit masks test coverage
-          working_directory: /tmp/src/niworkflows
-          command: |
-            cp /tmp/masks/reports/coverage.xml .
-            sed -i "s+/src/niworkflows+/tmp/src/niworkflows+g" coverage.xml
-            python -m codecov --file coverage.xml --flags masks -e CIRCLE_JOB
-
   test_package:
     docker:
       - image: circleci/python:3.8.5
@@ -593,14 +432,6 @@ workflows:
             tags:
               only: /.*/
 
-      - test_masks:
-          requires:
-            - build
-            - get_data
-          filters:
-            tags:
-              ignore: /.*/
-
       - deploy_pypi:
           requires:
             - test_pytest