CI: Install package across Python versions and run pytest

Author: effigies

.github/workflows/pythonpackage.yml

@@ -14,77 +14,85 @@ jobs:
   build:
     if: "!contains(github.event.head_commit.message, '[skip ci]')"
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10"]
+    steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v3
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Display Python version
+      run: python -c "import sys; print(sys.version)"
+    - name: Check python version and install build
+      run: |
+        python --version
+        python -m pip install -U build twine
+    - name: Build niworkflows
+      run: python -m build
+    - name: Check distributions
+      run: twine check dist/*
+    - uses: actions/upload-artifact@v3
+      with:
+        name: dist
+        path: dist/
+
+  test:
+    needs: [build]
+    runs-on: ubuntu-latest
     strategy:
       matrix:
         python-version: [3.7, 3.8, 3.9]
+        install: [sdist, wheel, repo, editable]
+    env:
+      INSTALL_TYPE: ${{ matrix.install }}
 
     steps:
+    - uses: actions/checkout@v3
+      with:
+        fetch-depth: 0
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v3
       with:
         python-version: ${{ matrix.python-version }}
-    - uses: actions/checkout@v2
+    - name: Fetch packages
+      uses: actions/download-artifact@v3
       with:
-        ssh-key: "${{ secrets.NIPREPS_DEPLOY }}"
-        fetch-depth: 0
-    - name: Build in confined, updated environment and interpolate version
+        name: dist
+        path: dist/
+    - name: Select archive
+      run: |
+        if [ "$INSTALL_TYPE" = "sdist" ]; then
+          ARCHIVE=$( ls dist/*.tar.gz )
+        elif [ "$INSTALL_TYPE" = "wheel" ]; then
+          ARCHIVE=$( ls dist/*.whl )
+        elif [ "$INSTALL_TYPE" = "repo" ]; then
+          ARCHIVE="."
+        elif [ "$INSTALL_TYPE" = "editable" ]; then
+          ARCHIVE="-e ."
+        fi
+        echo "ARCHIVE=$ARCHIVE" >> $GITHUB_ENV
+    - name: Install package
+      run: python -m pip install $ARCHIVE
+    - name: Check version
       run: |
-        python -m venv /tmp/buildenv
-        source /tmp/buildenv/bin/activate
-        python -m pip install -U setuptools pip wheel twine docutils
-        python setup.py sdist bdist_wheel
-        python -m twine check dist/niworkflows*
-
         # Interpolate version
         if [[ "$GITHUB_REF" == refs/tags/* ]]; then
           TAG=${GITHUB_REF##*/}
         fi
         THISVERSION=$( python get_version.py )
         THISVERSION=${TAG:-$THISVERSION}
-        echo "Expected VERSION: \"${THISVERSION}\""
-        echo "THISVERSION=${THISVERSION}" >> ${GITHUB_ENV}
-
-    - name: Install in confined environment [sdist]
-      run: |
-        python -m venv /tmp/install_sdist
-        source /tmp/install_sdist/bin/activate
-        python -m pip install --upgrade pip wheel
-        python -m pip install dist/niworkflows*.tar.gz
         INSTALLED_VERSION=$(python -c 'import niworkflows; print(niworkflows.__version__, end="")')
         echo "VERSION: \"${THISVERSION}\""
         echo "INSTALLED: \"${INSTALLED_VERSION}\""
         test "${INSTALLED_VERSION}" = "${THISVERSION}"
-
-    - name: Install in confined environment [wheel]
-      run: |
-        python -m venv /tmp/install_wheel
-        source /tmp/install_wheel/bin/activate
-        python -m pip install --upgrade pip wheel
-        python -m pip install dist/niworkflows*.whl
-        INSTALLED_VERSION=$(python -c 'import niworkflows; print(niworkflows.__version__, end="")')
-        echo "INSTALLED: \"${INSTALLED_VERSION}\""
-        test "${INSTALLED_VERSION}" = "${THISVERSION}"
-
-    - name: Install in confined environment [pip install .]
-      run: |
-        python -m venv /tmp/setup_install
-        source /tmp/setup_install/bin/activate
-        python -m pip install --upgrade pip wheel
-        python -m pip install .
-        INSTALLED_VERSION=$(python -c 'import niworkflows; print(niworkflows.__version__, end="")')
-        echo "INSTALLED: \"${INSTALLED_VERSION}\""
-        test "${INSTALLED_VERSION}" = "${THISVERSION}"
-
-    - name: Install in confined environment [pip install -e .]
-      run: |
-        python -m venv /tmp/setup_develop
-        source /tmp/setup_develop/bin/activate
-        python -m pip install pip
-        python -m pip install --upgrade pip wheel
-        python -m pip install -e .
-        INSTALLED_VERSION=$(python -c 'import niworkflows; print(niworkflows.__version__, end="")')
-        echo "INSTALLED: \"${INSTALLED_VERSION}\""
-        test "${INSTALLED_VERSION}" = "${THISVERSION}"
+    - name: Install test dependencies
+      run: python -m pip install "niworkflows[tests]"
+    - name: Run tests
+      run: pytest -sv --doctest-modules --cov niworkflows niworkflows
 
   flake8:
     if: "!contains(github.event.head_commit.message, '[skip ci]')"