STY: Apply ruff rule RUF039

DimitriPapadopoulos · DimitriPapadopoulos · commit fd2b27dd2ea5 · 2024-12-21T22:54:37.000+01:00
RUF039 First argument to `re.search()` is not raw string
diff --git a/niworkflows/interfaces/confounds.py b/niworkflows/interfaces/confounds.py
@@ -535,20 +535,20 @@ def _expand_shorthand(model_formula, variables):
     nss = _get_matches_from_data('non_steady_state_outlier[0-9]+', variables)
     spikes = _get_matches_from_data('motion_outlier[0-9]+', variables)
 
-    model_formula = re.sub('wm', wm, model_formula)
-    model_formula = re.sub('gsr', gsr, model_formula)
-    model_formula = re.sub('rps', rps, model_formula)
-    model_formula = re.sub('fd', fd, model_formula)
-    model_formula = re.sub('acc', acc, model_formula)
-    model_formula = re.sub('tcc', tcc, model_formula)
-    model_formula = re.sub('dv', dv, model_formula)
-    model_formula = re.sub('dvall', dvall, model_formula)
-    model_formula = re.sub('nss', nss, model_formula)
-    model_formula = re.sub('spikes', spikes, model_formula)
+    model_formula = re.sub(r'wm', wm, model_formula)
+    model_formula = re.sub(r'gsr', gsr, model_formula)
+    model_formula = re.sub(r'rps', rps, model_formula)
+    model_formula = re.sub(r'fd', fd, model_formula)
+    model_formula = re.sub(r'acc', acc, model_formula)
+    model_formula = re.sub(r'tcc', tcc, model_formula)
+    model_formula = re.sub(r'dv', dv, model_formula)
+    model_formula = re.sub(r'dvall', dvall, model_formula)
+    model_formula = re.sub(r'nss', nss, model_formula)
+    model_formula = re.sub(r'spikes', spikes, model_formula)
 
     formula_variables = _get_variables_from_formula(model_formula)
     others = ' + '.join(set(variables) - set(formula_variables))
-    model_formula = re.sub('others', others, model_formula)
+    model_formula = re.sub(r'others', others, model_formula)
     return model_formula
 
 
diff --git a/niworkflows/reports/core.py b/niworkflows/reports/core.py
@@ -384,7 +384,7 @@ def generate_report(self):
 
         if (logs_path / 'CITATION.html').exists():
             text = (
-                re.compile('<body>(.*?)</body>', re.DOTALL | re.IGNORECASE)
+                re.compile(r'<body>(.*?)</body>', re.DOTALL | re.IGNORECASE)
                 .findall((logs_path / 'CITATION.html').read_text())[0]
                 .strip()
             )
diff --git a/niworkflows/utils/bids.py b/niworkflows/utils/bids.py
@@ -388,7 +388,7 @@ def group_multiecho(bold_sess):
     def _grp_echos(x):
         if '_echo-' not in x:
             return x
-        echo = re.search('_echo-\\d*', x).group(0)
+        echo = re.search(r'_echo-\d*', x).group(0)
         return x.replace(echo, '_echo-?')
 
     ses_uids = []
diff --git a/niworkflows/viz/utils.py b/niworkflows/viz/utils.py
@@ -138,10 +138,10 @@ def extract_svg(display_object, dpi=300, compress='auto'):
     image_svg = svg2str(display_object, dpi)
     if compress is True or compress == 'auto':
         image_svg = svg_compress(image_svg, compress)
-    image_svg = re.sub(' height="[0-9]+[a-z]*"', '', image_svg, count=1)
-    image_svg = re.sub(' width="[0-9]+[a-z]*"', '', image_svg, count=1)
+    image_svg = re.sub(r' height="[0-9]+[a-z]*"', '', image_svg, count=1)
+    image_svg = re.sub(r' width="[0-9]+[a-z]*"', '', image_svg, count=1)
     image_svg = re.sub(
-        ' viewBox', ' preseveAspectRation="xMidYMid meet" viewBox', image_svg, count=1
+        r' viewBox', ' preseveAspectRation="xMidYMid meet" viewBox', image_svg, count=1
     )
     start_tag = '<svg '
     start_idx = image_svg.find(start_tag)

Original file line number	Diff line number	Diff line change
`@@ -384,7 +384,7 @@ def generate_report(self):`
`384`	`384`
`385`	`385`	`if (logs_path / 'CITATION.html').exists():`
`386`	`386`	`text = (`
`387`		`- re.compile('<body>(.*?)</body>', re.DOTALL \| re.IGNORECASE)`
	`387`	`+ re.compile(r'<body>(.*?)</body>', re.DOTALL \| re.IGNORECASE)`
`388`	`388`	`.findall((logs_path / 'CITATION.html').read_text())[0]`
`389`	`389`	`.strip()`
`390`	`390`	`)`