docker: Pull FreeSurfer from DockerHub

Author: effigies

Dockerfile

@@ -51,10 +51,10 @@ RUN apt-get update && \
     apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
 # FreeSurfer 7.4.1
-FROM downloader AS freesurfer
-COPY docker/files/freesurfer7.4.1-exclude.txt /usr/local/etc/freesurfer7.4.1-exclude.txt
-RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.4.1/freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz \
-     | tar zxv --no-same-owner -C /opt --exclude-from=/usr/local/etc/freesurfer7.4.1-exclude.txt
+# FROM downloader AS freesurfer
+# COPY docker/files/freesurfer7.4.1-exclude.txt /usr/local/etc/freesurfer7.4.1-exclude.txt
+# RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.4.1/freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz \
+#      | tar zxv --no-same-owner -C /opt --exclude-from=/usr/local/etc/freesurfer7.4.1-exclude.txt
 
 # AFNI
 FROM downloader AS afni
@@ -173,7 +173,7 @@ RUN apt-get update -qq \
     && ldconfig
 
 # Install files from stages
-COPY --from=freesurfer /opt/freesurfer /opt/freesurfer
+COPY --from=freesurfer/freesurfer:7.4.1 /usr/local/freesurfer /opt/freesurfer
 COPY --from=afni /opt/afni-latest /opt/afni-latest
 COPY --from=petpvc /usr/local /usr/local