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docs/usage.rst
@@ -239,6 +239,8 @@ Use ``--ref-mask-name`` to select a predefined region and
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The available masks are and do not require ``--ref-mask-index`` to be specified:
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- ``cerebellum``: Cerebellar gray matter (requires the ``--seg gtm`` option).
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- ``semiovale``: White matter in the centrum semiovale (requires the ``--seg wm`` option).
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+- ``neocortex``: Neocortical gray matter (requires the ``--seg gtm`` option).
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+- ``thalamus``: Thalamic gray matter (requires the ``--seg gtm`` option).
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The presets are defined in ``petprep/data/reference_mask/config.json``.
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