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fix: Create PET reports instead of func
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petprep/reports/core.py

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -96,7 +96,7 @@ def generate_reports(
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bootstrap_file = data.load('reports-spec.yml')
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html_report = 'report.html'
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else:
99-
# Beyond a threshold, we separate the anatomical report from the functional.
99+
# Beyond a threshold, we separate the anatomical report from the PET.
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bootstrap_file = data.load('reports-spec-anat.yml')
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html_report = f'sub-{subject_label}_anat.html'
102102

@@ -116,19 +116,19 @@ def generate_reports(
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if n_ses > config.execution.aggr_ses_reports:
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# Beyond a certain number of sessions per subject,
119-
# we separate the functional reports per session
119+
# we separate the PET reports per session
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if session_list is None:
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all_filters = config.execution.bids_filters or {}
122-
filters = all_filters.get('pet', all_filters.get('bold', {}))
122+
filters = all_filters.get('pet', {})
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session_list = config.execution.layout.get_sessions(
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subject=subject_label, **filters
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)
126126

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session_list = [ses.removeprefix('ses-') for ses in session_list]
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for session_label in session_list:
130-
bootstrap_file = data.load('reports-spec-func.yml')
131-
html_report = f'sub-{subject_label}_ses-{session_label}_func.html'
130+
bootstrap_file = data.load('reports-spec-pet.yml')
131+
html_report = f'sub-{subject_label}_ses-{session_label}_pet.html'
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report_error = run_reports(
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output_dir,
@@ -137,7 +137,7 @@ def generate_reports(
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bootstrap_file=bootstrap_file,
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out_filename=html_report,
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reportlets_dir=reportlets_dir,
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errorname=f'report-{run_uuid}-{subject_label}-func.err',
140+
errorname=f'report-{run_uuid}-{subject_label}-pet.err',
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subject=subject_label,
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session=session_label,
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)

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