@@ -8,8 +8,8 @@ available and are used as the input.
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Certain processing steps will run only when the required metadata is
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available in the input dataset.
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- A (very) high-level view of the simplest pipeline (for a single-band dataset with only
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- one task, single-run, with no slice-timing information nor fieldmap acquisitions )
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+ A (very) high-level view of the simplest pipeline (for a single dataset with only
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+ a single tracer and single baseline )
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is presented below:
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.. workflow ::
@@ -394,27 +394,6 @@ customized via the :option:`--hmc-fwhm` and :option:`--hmc-start-time`
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command line options. By default a 10 mm FWHM Gaussian is applied and
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estimation begins at 120 s.
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- Susceptibility Distortion Correction (SDC)
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- ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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- One of the major problems that affects :abbr: `EPI ( echo planar imaging ) ` data
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- is the spatial distortion caused by the inhomogeneity of the field inside
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- the scanner.
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-
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- .. figure :: _static/unwarping.svg
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-
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- Applying susceptibility-derived distortion correction, based on
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- fieldmap estimation.
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-
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- Please note that all routines for susceptibility-derived distortion correction
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- have been excised off of *PETPrep * for utilization on other projects
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- (e.g., `dMRIPrep <https://www.nipreps.org/dmriprep >`__).
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- For more detailed documentation on
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- :abbr: `SDC ( susceptibility-derived distortion correction ) `
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- routines, check on the `SDCFlows component <https://www.nipreps.org/sdcflows >`__.
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-
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- Theory, methods and references are found within the
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- `SDCFlows documentation <https://www.nipreps.org/sdcflows/master/api/sdcflows.workflows.fit.fieldmap.html >`__.
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-
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Pre-processed PET in native space
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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:py:func: `~petprep.workflows.pet.fit.init_pet_native_wf `
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