FIX: update workflow

Author: mnoergaard

petprep/workflows/pet/outputs.py

@@ -191,10 +191,10 @@ def init_func_fit_reports_wf(
         ds_refmask_report = pe.Node(
             DerivativesDataSink(
                 base_directory=output_dir,
-                desc='refmask',
-                ref=ref_name,
+                desc='ref',
+                label=ref_name,
                 datatype='figures',
-                allowed_entities=('ref',),
+                allowed_entities=('label',),
             ),
             name='ds_report_refmask',
             run_without_submitting=True,
@@ -329,11 +329,11 @@ def init_func_fit_reports_wf(
         ds_pet_t1_refmask_report = pe.Node(
             DerivativesDataSink(
                 base_directory=output_dir,
-                desc='refmask',
-                ref=ref_name,
+                desc='ref',
+                label=ref_name,
                 suffix='pet',
                 datatype='figures',
-                allowed_entities=('ref',),
+                allowed_entities=('label',),
             ),
             name='ds_pet_t1_refmask_report',
         )
@@ -516,9 +516,9 @@ def init_ds_refmask_wf(
             base_directory=output_dir,
             datatype='anat',
             suffix='mask',
-            desc='refmask',
-            ref=ref_name,
-            allowed_entities=('ref',),
+            desc='ref',
+            label=ref_name,
+            allowed_entities=('label',),
             compress=True,
         ),
         name='ds_refmask',
@@ -1002,10 +1002,10 @@ def init_refmask_report_wf(
     ds_mask_report = pe.Node(
         DerivativesDataSink(
             base_directory=output_dir,
-            desc='refmask',
-            ref=ref_name,
+            desc='ref',
+            label=ref_name,
             datatype='figures',
-            allowed_entities=('ref',),
+            allowed_entities=('label',),
             suffix='pet',
         ),
         name='ds_report_refmask',

petprep/workflows/pet/reference_mask.py

@@ -72,9 +72,9 @@ def init_pet_refmask_wf(
     ds_morph_tsv = pe.Node(
         DerivativesDataSink(
             base_directory=config.execution.petprep_dir,
-            ref=ref_mask_name,
-            desc='refmask',
-            allowed_entities=('ref',),
+            label=ref_mask_name,
+            desc='ref',
+            allowed_entities=('label',),
             suffix='morph',
             extension='.tsv',
             datatype='anat',

petprep/workflows/pet/tests/test_outputs.py

@@ -36,8 +36,8 @@ def test_datasink_datatype(tmp_path: Path):
         wf = init_ds_refmask_wf(output_dir=out_dir, ref_name='test')
         ref_node = wf.get_node('ds_refmask')
         assert ref_node.inputs.datatype == 'anat'
-        assert ref_node.inputs.desc == 'refmask'
-        assert ref_node.inputs.ref == 'test'
+        assert ref_node.inputs.desc == 'ref'
+        assert ref_node.inputs.label == 'test'
         wf = init_ds_pet_native_wf(
             bids_root=bids_dir,
             output_dir=out_dir,
@@ -81,7 +81,7 @@ def test_refmask_sources(tmp_path: Path):
 
         wf.run()
 
-        out_files = list(out_dir.rglob('*desc-refmask*_mask.nii.gz'))
+        out_files = list(out_dir.rglob('*desc-ref*_mask.nii.gz'))
         assert out_files, 'Reference mask derivative was not generated'
         out_file = Path(out_files[0])
         metadata = json.loads(out_file.with_suffix('').with_suffix('.json').read_text())