Merge pull request #348 from effigies/ci/fix_codecov

CI: Use supported codecov uploaders

Author: effigies

.circleci/config.yml

@@ -42,7 +42,8 @@ _pull_from_registry: &pull_from_registry
 
 version: 2.1
 orbs:
-  docker: circleci/[email protected]
+  docker: circleci/[email protected]
+  codecov: codecov/[email protected]
 
 jobs:
   cache_test_data:
@@ -343,15 +344,9 @@ jobs:
       - store_test_results:
           path: /tmp/tests
 
-      - run:
-          name: Submit unit test coverage
-          working_directory: /tmp/src/sdcflows
-          command: |
-            export PY3=$( pyenv versions | awk '/^\* 3/ { print $2 }' )
-            pyenv local $PY3
-            python3 -m pip install codecov
-            python3 -m codecov --file /tmp/tests/unittests.xml \
-                --flags unittests -e CIRCLE_JOB
+      - codecov/upload:
+          file: /tmp/tests/unittests.xml
+          flags: unittests
 
   build_docs:
     docker:

.github/workflows/unittests.yml

@@ -183,7 +183,7 @@ jobs:
         export PATH=$ANTSPATH:${AFNI_HOME}:/usr/lib/fsl/5.0:$PATH
         pytest -v --cov sdcflows --cov-report xml:cov.xml --doctest-modules sdcflows
 
-    - name: Submit code coverage
-      run: |
-        pip install codecov
-        python -m codecov --flags travis --file cov.xml -e $GITHUB_RUN_NUMBER
+    - uses: codecov/codecov-action@v3
+      with:
+        file: cov.xml
+      if: ${{ always() }}