chore(env): Compile PyPI dependencies, remove min-requirements

Author: effigies

.maint/update_requirements.py

@@ -1,15 +1,281 @@
-# Auto-generated by .maint/update_requirements.py
-acres>=0.2.0
-attrs>=20.1.0
-nibabel>=3.0
-nipype>=1.8.5
-migas>=0.4.0
-nireports>=24.1.0
-niworkflows>=1.11.0
-nitransforms>=24.1.0
-numpy>=1.22
-pybids>=0.16.4
-scikit-image>=0.18
-scipy>=1.8.1
-templateflow>=23.1
-toml>=0.10
+# This file was autogenerated by uv via the following command:
+#    uv pip compile --strip-extras pyproject.toml -o requirements.txt -p 3.12 -c-
+acres==0.3.0
+    # via
+    #   sdcflows (pyproject.toml)
+    #   nipype
+    #   nireports
+    #   niworkflows
+attrs==25.3.0
+    # via
+    #   sdcflows (pyproject.toml)
+    #   jsonschema
+    #   niworkflows
+    #   referencing
+bids-validator==1.14.7.post0
+    # via pybids
+bidsschematools==1.0.4
+    # via bids-validator
+certifi==2025.1.31
+    # via requests
+charset-normalizer==3.4.1
+    # via requests
+ci-info==0.3.0
+    # via
+    #   etelemetry
+    #   migas
+click==8.1.8
+    # via
+    #   bidsschematools
+    #   nipype
+    #   pybids
+contourpy==1.3.1
+    # via matplotlib
+cycler==0.12.1
+    # via matplotlib
+docopt==0.6.2
+    # via num2words
+etelemetry==0.3.1
+    # via nipype
+filelock==3.18.0
+    # via nipype
+fonttools==4.56.0
+    # via matplotlib
+formulaic==1.1.1
+    # via pybids
+frozendict==2.4.6
+    # via pybids
+fsspec==2025.3.0
+    # via universal-pathlib
+greenlet==3.1.1
+    # via sqlalchemy
+h5py==3.13.0
+    # via nitransforms
+idna==3.10
+    # via requests
+imageio==2.37.0
+    # via scikit-image
+interface-meta==1.3.0
+    # via formulaic
+isodate==0.6.1
+    # via rdflib
+jinja2==3.1.6
+    # via niworkflows
+joblib==1.4.2
+    # via
+    #   nilearn
+    #   scikit-learn
+jsonschema==4.23.0
+    # via bidsschematools
+jsonschema-specifications==2024.10.1
+    # via jsonschema
+kiwisolver==1.4.8
+    # via matplotlib
+lazy-loader==0.4
+    # via scikit-image
+looseversion==1.3.0
+    # via
+    #   nipype
+    #   niworkflows
+lxml==5.3.1
+    # via
+    #   nilearn
+    #   nireports
+    #   prov
+    #   svgutils
+markupsafe==3.0.2
+    # via jinja2
+matplotlib==3.9.4
+    # via
+    #   nireports
+    #   niworkflows
+    #   seaborn
+migas==0.4.0
+    # via sdcflows (pyproject.toml)
+networkx==3.4.2
+    # via
+    #   nipype
+    #   prov
+    #   scikit-image
+nibabel==5.3.2
+    # via
+    #   sdcflows (pyproject.toml)
+    #   nilearn
+    #   nipype
+    #   nireports
+    #   nitransforms
+    #   niworkflows
+    #   pybids
+nilearn==0.11.1
+    # via
+    #   nireports
+    #   niworkflows
+nipype==1.10.0
+    # via
+    #   sdcflows (pyproject.toml)
+    #   nireports
+    #   niworkflows
+nireports==25.0.1
+    # via sdcflows (pyproject.toml)
+nitransforms==24.1.1
+    # via
+    #   sdcflows (pyproject.toml)
+    #   niworkflows
+niworkflows==1.13.0
+    # via sdcflows (pyproject.toml)
+num2words==0.5.14
+    # via pybids
+numpy==1.26.4
+    # via
+    #   sdcflows (pyproject.toml)
+    #   contourpy
+    #   formulaic
+    #   h5py
+    #   imageio
+    #   matplotlib
+    #   nibabel
+    #   nilearn
+    #   nipype
+    #   nireports
+    #   nitransforms
+    #   niworkflows
+    #   pandas
+    #   pybids
+    #   scikit-image
+    #   scikit-learn
+    #   scipy
+    #   seaborn
+    #   tifffile
+    #   transforms3d
+packaging==24.2
+    # via
+    #   etelemetry
+    #   lazy-loader
+    #   matplotlib
+    #   nibabel
+    #   nilearn
+    #   nipype
+    #   niworkflows
+    #   scikit-image
+pandas==2.2.3
+    # via
+    #   formulaic
+    #   nilearn
+    #   nireports
+    #   niworkflows
+    #   pybids
+    #   seaborn
+pillow==11.1.0
+    # via
+    #   imageio
+    #   matplotlib
+    #   scikit-image
+prov==2.0.1
+    # via nipype
+puremagic==1.28
+    # via nipype
+pybids==0.19.0
+    # via
+    #   sdcflows (pyproject.toml)
+    #   nireports
+    #   niworkflows
+    #   templateflow
+pydot==3.0.4
+    # via nipype
+pyparsing==3.2.1
+    # via
+    #   matplotlib
+    #   pydot
+    #   rdflib
+python-dateutil==2.9.0.post0
+    # via
+    #   matplotlib
+    #   nipype
+    #   pandas
+    #   prov
+pytz==2025.1
+    # via pandas
+pyyaml==6.0.2
+    # via
+    #   bidsschematools
+    #   nireports
+    #   niworkflows
+rdflib==6.3.2
+    # via
+    #   nipype
+    #   prov
+referencing==0.36.2
+    # via
+    #   jsonschema
+    #   jsonschema-specifications
+requests==2.32.3
+    # via
+    #   etelemetry
+    #   nilearn
+    #   templateflow
+rpds-py==0.23.1
+    # via
+    #   jsonschema
+    #   referencing
+scikit-image==0.25.2
+    # via
+    #   sdcflows (pyproject.toml)
+    #   niworkflows
+scikit-learn==1.6.1
+    # via nilearn
+scipy==1.15.2
+    # via
+    #   sdcflows (pyproject.toml)
+    #   formulaic
+    #   nilearn
+    #   nipype
+    #   nitransforms
+    #   niworkflows
+    #   pybids
+    #   scikit-image
+    #   scikit-learn
+seaborn==0.13.2
+    # via
+    #   nireports
+    #   niworkflows
+simplejson==3.20.1
+    # via nipype
+six==1.17.0
+    # via
+    #   isodate
+    #   python-dateutil
+sqlalchemy==2.0.39
+    # via pybids
+svgutils==0.3.4
+    # via niworkflows
+templateflow==24.2.2
+    # via
+    #   sdcflows (pyproject.toml)
+    #   nireports
+    #   niworkflows
+threadpoolctl==3.6.0
+    # via scikit-learn
+tifffile==2025.3.13
+    # via scikit-image
+toml==0.10.2
+    # via sdcflows (pyproject.toml)
+tqdm==4.67.1
+    # via templateflow
+traits==7.0.2
+    # via nipype
+transforms3d==0.4.2
+    # via niworkflows
+typing-extensions==4.12.2
+    # via
+    #   formulaic
+    #   nibabel
+    #   referencing
+    #   sqlalchemy
+tzdata==2025.1
+    # via pandas
+universal-pathlib==0.2.6
+    # via pybids
+urllib3==2.3.0
+    # via requests
+wrapt==1.17.2
+    # via formulaic